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Vet-LIRN Cooperative Agreements

Vet-LIRN Cooperative Agreements

Evaluation of Salmonella in Symptomatic and Asymptomatic Pets - a Vet-LIRN Program Cooperative Agreement

From 2012 to 2014, eleven Vet-LIRN cooperative-agreement laboratories evaluated Salmonella prevalence in the cat and dog pet population across the country. This study helps CVM to understand the estimated prevalence of Salmonella in the dog and cat population. The harmonized method ensures consistent data is obtained from Vet-LIRN veterinary diagnostic laboratories participating in this special investigation. Data obtained from this study identified various serotypes of Salmonella found in household pets and will provide a baseline of data that can be used in subsequent outbreak investigations. Over 3,000 samples were tested. Laboratories collected samples from dogs and cats without signs of salmonellosis (asymptomatic) and with signs of potential salmonellosis (symptomatic). Of the positive cases, approximately half of the dogs were non-diarrheic. Salmonella-positive dogs were more likely to have consumed raw food or to have consumed probiotics. In addition to our initial plan, we conducted whole-genome sequencing (WGS), pulsed-field gel electrophoresis (PFGE) and antimicrobial susceptibility testing (AST) on all isolates. The work was published in the Journal of Clinical Microbiology.

CVM Vet-LIRN Veterinary Diagnostic Laboratory Program (U18) (https://grants.nih.gov/grants/guide/pa-files/PAR-17-141.html; http://grants.nih.gov/grants/guide/pa-files/PA-12-194.html)

Infrastructure funding is key to making sure that the network can function and that laboratories can work to support Vet-LIRN’s mission. Beginning in 2012, upwards of 33 network laboratories receive funding. These awards facilitate participation in Vet-LIRN activities such as case investigations, emergency exercises, proficiency tests, and laboratory accreditation. The agreements also increase the agency’s capability to analyze an increased number of samples in the event of animal food- or drug-related illnesses or other large-scale emergency events that require increased testing of implicated diagnostic or animal food samples. The new agreement allows network laboratories to request additional funds if they are participating in a specific Vet-LIRN project, such as the Antimicrobial Resistance (AMR) Pilot Project or if they are conducting whole-genome sequencing (WGS) work, or if their caseload is particularly heavy. 

Vet-LIRN Network Capacity-Building Projects (U18)

The new cooperative agreement is intended to build domestic laboratory capacity under the Food Safety and Modernization Act (FSMA) and develop Vet-LIRN laboratory capability and capacity to investigate potential animal foodborne illness outbreaks. Vet-LIRN Laboratories may apply for funding for research related to emerging public food safety issues identified by the Vet-LIRN Program Office and for equipment and personnel necessary to expand laboratory capability and capacity. To date, 19 grants were awarded for specific projects and 15 grants were awarded for equipment. 

CVM Vet-LIRN Cooperative Agreement Program to Expand and Validate Testing Methods for Food Contaminants in Animal Diagnostic Specimens (U18) (2013)

Many veterinary diagnostic laboratories use tests that are only validated in their own laboratory. This Cooperative Agreement Program, also called Method Grants, enables the expansion and validation of detection methods that can be used by network laboratories, thereby increasing the suite of validated methods available for testing during case investigations, outbreaks, or other emergency events. Testing animal diagnostic specimens enables Vet-LIRN to investigate consumer complaints about animal food or drugs. Such investigations require validated test methods for animal diagnostic samples, such as urine, blood, feces, saliva, liver, and kidney; these are not typical food matrices, and traditional food-testing laboratories do not test for them. The program also strengthens communication, collaboration, and integration of the network laboratories, which is crucial for providing a quick response in an emergency. Seven laboratories received funding for chemistry-related projects and three received funding for surveillance and sequencing of select pathogens in diagnostic samples. 

Figure 1. What are the steps during a BMT?

FDA awards grants to Vet-LIRN network laboratories to develop methods needed for case investigations. We conduct blinded method tests (BMTs) during the method's development. During a single laboratory BMT, the method-originating lab develops and validates the method. We prepare and ship blinded samples to the lab for testing. The lab reports the results and transfers the method to other network labs. Then, we perform a multi-laboratory BMT before the method is shared with all network labs.

Blinded Method Test

Testing animal diagnostic specimens enables Vet-LIRN to investigate consumer complaints about animal food or drugs. The Methods Grants help Vet-LIRN ensure that the data from our laboratories is derived from methods that have been validated. Although Vet-LIRN methods are not regulatory methods, the Office of Foods and Veterinary Medicine (OFVM) method validation guidelines are generally followed during the method development and evaluation. Most of the projects have the following phases:

  1. Method-Originating Laboratory (MO) – Cooperative-Grant Recipient
    1. Method development/optimization.
    2. Validation by the single MO laboratory. 
  2. Vet-LIRN Program Office
    1. Vet-LIRN evaluates the method performance in the MO laboratory through exercises called Blinded Method Tests (BMTs). Vet-LIRN prepares samples, and the MO laboratory analyzes blinded samples.
  3. MO Laboratory 
    1. Method transfer to other Vet-LIRN collaborating laboratories. 
  4. Vet-LIRN Program Office
    1. Vet-LIRN evaluates the method performance in multiple laboratories with a Blinded Method Test. 

The methods developed by our Vet-LIRN laboratories are extensively evaluated and will be

  1. published in a scientific journal,
  2. adopted and used by Vet-LIRN laboratories for animal diagnostic purposes, and
  3. listed in OFVM’s method portal for public dissemination.

Highlighted methods that completed BMTs in 2018 include

  1. University of Kentucky – Evaluation of LC-MS/MS methods to detect multiple anticoagulant rodenticides in liver and blood
    Anticoagulant rodenticide poisonings of non-target species (i.e., wildlife, domestic farm animals, and pets) due to accidental consumption and by malicious adulteration (baiting) occur and can be confused with food-related toxicities by owners of the animals, thus a reliable method is needed to detect the chemicals in animal samples.
  2. University of Pennsylvania – Evaluation of CHARM based method to detect aflatoxin B1 in various dog foods
    Mold can produce aflatoxin B1 in food ingredients such as grains (e.g. corn, wheat, barley), rice, nuts and fruits. Aflatoxin B1 is the most toxic aflatoxin and is known for its mutagenic, carcinogenic, teratogenic, and immunosuppressive impact. It can cause death or intoxication in livestock and pets resulting in reduced growth rate, immunosuppression, and liver injury. Therefore, fast methods to identify this toxicant in animal food are desirable.
  3. University of California, Davis – Evaluation of methods to detect multiple carbamate pesticides in rumen contents
    Accidental pesticide poisonings can be mistaken for foodborne toxicities, so there is a need to identify these compounds in tissues or stomach contents. The new method identifies 12 pesticides at once in stomach contents of ruminants.
  4. Iowa State University – Development and evaluation of methods to detect aflatoxins in complex matrices such as liver and urine 
    Many species of mold can produce aflatoxins B1, B2, G1, and G2 in a wide variety of food ingredients such as corn, barley, rice, nuts, and fruits. Aflatoxins can also undergo chemical modifications (into M1, Q1) in animal liver after being consumed. Since representative feed samples may not be available and feed-based test methods are not confirmatory of an etiologic diagnosis, there is a need for a method to detect these chemicals in animal tissues. A urine test will allow diagnosis to be made in living animals.