1
DEPARTMENT OF HEALTH AND HUMAN
SERVICES
FOOD AND DRUG
ADMINISTRATION
CENTER FOR BIOLOGICS EVALUATION
AND RESEARCH
BLOOD PRODUCTS ADVISORY COMMITTEE
This
transcript has not been edited or corrected, but appears as received from the
commercial transcribing service:
Accordingly the Food and Drug Administration makes no representation as
to its accuracy.
Friday, July 23, 2004
8:00 a.m.
Gaithersburg Holiday
Inn
2 Montgomery Village
Avenue
Gaithersburg, Maryland
20877
2
PARTICIPANTS
Kenrad E. Nelson, M.D., Chair
Linda A. Smallwood, Ph.D., Executive
Secretary
Pearline K. Muckelvene, Scientific
Advisors
& Consultants Staff
MEMBERS:
James R. Allen, M.D., M.P.H.
Kenneth Davis, Jr., M.D.
Donna M. DiMichele, M.D.
Samuel H. Doppelt, M.D.
Jonathan C. Goldsmith, M.D.
Harvey G. Klein, M.D.
Suman Laal, Ph.D.
Katherine E. Knowles,
Acting Consumer Representative
D. Michael Strong,
Non-Voting Industry Representative
TEMPORARY VOTING MEMBERS:
Liana Harvath, Ph.D.
F. Blaine Hollinger, M.D.
Katharine E. Knowles
Matthew J. Kuehnert, M.D.
Susan F. Leitman, M.D.
Keith C. Quirolo, M.D.
George B. Schreiber, Sc.D.
Donna S. Whittaker, Ph.D.
3
C O N T E N T S
PAGE
Update on West Nile Virus, Hira Nakhasi,
Ph.D. 6
IV. Hepatitis B Virus Nucleic Acid
Testing (NAT)
for Donors of Whole
Blood:
A. Introduction and
Background,
Gerardo Kaplan, Ph.D.,
Laboratory
of Hepatitis and Related
Emerging
Viruses, DETTD, OBRR, FDA 28
B. Serological Course of
Hepatitis B,
F. Blaine Hollinger, M.D.,
Baylor College of
Medicine 32
C. Preclinical and Clinical
Data for
HBV MP NAT, Steven Herman, Ph.D.,
Roche Molecular
Systems 51
Allan Frank M.D., M.S.,
Roche Molecular
Systems 65
Open Public Hearing:
Michael Busch, Blood Centers
of the Pacific 103
William Andrew Heaton,
Chiron 121
Sherrol McDonough,
Gen-Probe 129
Richard Smith, NGI 136
Harvey Alter, AABB 144
IV. Hepatitis B Virus Nucleic Acid
Testing (NAT)
for Donors of Whole
Blood:
E. Committee Discussion and
Recommendations 154
V. Current Trends in Plasma Product
Manufacturing
A. Introduction and
Background,
Mark Weinstein, Ph.D.,
Associate
Deputy Director, OBRR, FDA 223
B. Presentation, Jan M.
Bult, CEO,
Plasma Protein
Therapeutics
Association 225
Open Public Hearing:
Patrick Schmidt, CEO, FFF
Enterprises 258
4
1 P R O C E E D I N G S
2 DR. SMALLWOOD:
May I ask all advisory
3
committee members to, please, take your seats?
4
Welcome to the second day of the Blood Products
5
Advisory Committee meeting.
Yesterday I read the
6
conflict of interest statement that applies to this
7
meeting, however, we have a new process now and we
8
will read a conflict of interest statement for each
9
day.
10 So, if you will indulge me, I will read
11
that at this point. This brief
announcement is in
12
addition to the conflict of interest statement read
13
at the beginning of the meeting yesterday, and is
14
part of the public record for the Blood Products
15
Advisory Committee meeting on July 23, 2004. This
16
announcement addresses conflicts of interest for
17
topic V.
18 Drs. Liana Harvath, Blaine Hollinger,
19
Matthew Kuehnert, Susan Leitman, Keith Quirolo,
20
George Schreiber, Donna Whittaker and Ms. Katherine
21
Knowles have been appointed as temporary voting
22
members for this meeting
5
1
Dr. Michael Strong is participating in this meeting
2
as the non-voting industry representative, acting
3
on behalf of regulated industry.
The Food and Drug
4
Administration has prepared general matters waivers
5
for the special government employees participating
6
in this meeting who required a waiver under Title
7
XVIII, United States Code 208.
8 In addition, there are regulated industry
9
and other outside organization speakers making
10
presentations. These speakers
have financial
11
interests associated with their employers and with
12
other regulated firms. They were
not screened for
13
these conflicts of interest. I
would just like to
14
remind everyone participating to, please, make
15
known, if you have not already done so, any
16
affiliation you may have and your status with that
17
affiliation prior to speaking.
18 Our committee chairman, Dr. Kenrad Nelson
19
has joined us this morning, and we also have Dr.
20
Blaine Hollinger who will also be part of the
21
committee this morning.
22 I just wanted to announce to those who
6
1
were not here yesterday that the next date, which
2
is tentative however pretty much firm, for the next
3
Blood Products Advisory Committee meeting will be
4
October 21st and 22nd, 2004.
5 At this time I will turn over the
6
proceedings of the meeting to the chairman, Dr.
7
Kenrad Nelson.
8 Update on West Nile Virus
9 DR. NELSON:
Thank you, Dr. Smallwood. I
10
will try to keep awake after the 24-hour airplane
11
ride. I came in last night but I
feel really
12
pretty good and I am very interested in the topic
13
today so I think that will help.
14 The first topic is an update on West Nile
15
virus by Hira Nakhasi.
16 DR. NAKHASI:
Good morning. I just want
17
to give you an update, as Dr. Kenrad Nelson
18
mentioned, on the West Nile epidemic and donor
19
testing which is happening now, in 2004. First I
20
will try to wrap up last year's things and then
21
come up to 2004.
22 Next slide, please.
The topics which I
7
1
will update you on are, as I said, last year's
2
epidemiology and the investigational West Nile
3
testing outcome of that, and some of the
4
transfusion-transmitted cases, and then the trigger
5
for the ID-NAT testing. Then I
will update you on
6
the West Nile donor and product management
7
recommendations with the recent revelations we have
8
got. Then I will update you on
the 2004 epidemic
9
and investigational West Nile testing, and also our
10
efforts in-house on the panel development and other
11
scientific issues--you know, the variation among
12
the strains of viruses infectivity of these
13
studies.
14 Next slide, please.
If you summarize in
15
one slide the last year's epidemic, it really
16
basically sums up that we had approximately 1000
17
[sic] cases or, to be precise, 9862 cases, human
18
cases, and 264 deaths. And, the
proportion of the
19
West Nile meningitis/encephalitis was 29 percent,
20
whereas, the fever was 69 percent in the human
21
cases.
22 Forty-six states, including
Washington,
8
1
D.C., were endemic, and donor testing started, as
2
all of you know, in July of 2003, using two
3
investigational NAT testing. In
some cases, a
4
small proportion started in the middle of June.
5
Despite this testing, I think these two
6
investigational NAT testing--these are minipool and
7
the two tests were the Gen-Probe test and the Roche
8
test, and Roche tested, as you know, in pools of 6
9
and the Gen-Probe test involves a pool of 16.
10 Despite testing, there were some
11
transfusion-transmitted cases and CDC had
12
investigated a total of 23 cases.
They were
13 confirmed by NAT and IgM reactivity and also by
14
follow-up of both the donor and the recipient. Out
15
of the 23, 6 were confirmed cases.
Only 4/6, you
16
may recall, had very low viremia, around 0.1
17
pfu/ml. Eleven cases did not confirm;
3 were
18
inconclusive because of the follow-up situation;
19
and 3 were open investigations.
20 Next slide, please.
As I said, since it
21
started on July 1 of last year, screening using
22
minipool NAT and IND, all geographic regions of the
9
1
U.S. were screening at that time.
With that, what
2
happened 1000 units of West Nile infected blood
3
donors were interdicted after screening
4
approximately 8 million donations.
So, I think it
5
was a very, very vast improvement over the year
6
before when there was no testing.
The last
7
positive donation was reported in the middle of
8
December in 2003.
9
Despite this testing, as you
see, the
10
majority of cases were interdicted, more than 75
11
percent, but there was a small percentage which
12
went through because, as you know, this was done in
13
minipool NAT.
14 Next slide, please.
This slide is Mike
15
Busch's slide where he showed why we were missing
16
some of these cases, and we knew that minipool NAT
17
sensitivity was such. The areas,
you know, where
18
the wrap-up takes place when--you know, he calls it
19
stage I, II, III, IV and V, and in stage I and II
20
they are ID-NAT positive but minipool NAT negative,
21
IgM negative. So, it could be
plus/minus. So,
22
during that stage they become IgM positive but they
10
1
become minipool negative and they are still ID-NAT
2
positive. So, this region and
this region were the
3
ones where they went through.
But, you know, these
4
were IgM negative and these were IgM positive so
5
the question is what is the infection of these
6
types of samples.
7 Next slide, please.
So there was a
8
potential for transmission of West Nile through
9
minipool NAT negative blood of low viremia in some
10
patients. Therefore, what
happened at that time is
11
that limited prospective ID-NAT testing started in
12
high incidence areas. If you
remember last year,
13
Colorado, Kansas and certain other areas, and
14
Nebraska were hot spots and ID-NAT was triggered at
15
that time, and the trigger was based on if the
16
preceding the rate of 1/200 minipool NAT positive
17
rate of 1/250, then they would start testing with
18
ID-NAT testing. Also, what happened
at that time
19
is that there was voluntary withdrawal of the
20
frozen transfusables in the high incidence areas
21
before the ID-NAT was initiated by some blood
22
establishments.
11
1 Next slide, please.
There was also
2
another initiative started at that time. The
3
initiative was to go back to do the retrospective
4
study on the minipool NAT negative samples and test
5
them by ID-NAT to find out how many we missed. It
6
would also let us know what was the low level of
7
viremic high incidence samples in high incidence
8
areas where minipool NAT did not pick them up.
9 The other purpose of the study was also to
10
identify samples which are like minipool NAT low
11
titer, minipool NAT negative but ID-NAT positive
12
for infectivity studies. I told
you that we do not
13
know whether those samples are still infectious at
14
low levels, and what is the level of infectivity.
15
So, these samples would be tested in various animal
16
models including non-human primates.
Also, the
17
purpose of these samples is to really find out the
18
relative clinical sensitivity of various West Nile
19
investigational testing. I will
report in a minute
20
what is happening with the infectivity state.
21 Next slide, please.
Based on the
22
observation that we had minipool testing and we
12
1
missed some of the samples because the viremia was
2
low, and also in the ID-NAT testing in the high
3
incidence areas--based on those studies and based
4
on the logistics issues, the question was what
5
should be the trigger for ID-NAT, and also logistic
6
issues such the availability of adequate resources,
7
recruitment, reagents and trained technologists.
8 So, the discussion about the trigger for
9
ID-NAT was held in collaboration with the AABB task
10
force. By the way, we are very
indebted to the
11
AABB task force for the biweekly meetings almost
12
throughout the year, and weekly meetings with the
13
task force during the epidemic to update us and
14
jointly discuss the strategies for how to go
15
forward with the testing performance, as well as
16
the epidemic.
17 So, based on that discussion, which was
18
held in February, the recommendations were the
19
following for the ID-NAT trigger:
It was discussed
20
that we should monitor reactive rates by zones
21
daily, enrolled 7 days when the epidemic was
22
starting, which was usually, you know, around the
13
1
beginning of July and early June even and this year
2
even May some cases were found.
The trigger was
3
that if you have 2-4 cases in any geographic
4
area--that is the blood collection, and the
5
frequency of 1/1000. This was
based on the fact
6
that every 1/4 would be missed by minipool NAT and
7
require ID-NAT. This was the
study done by ARC and
8
BSL and they found out that that would be the
9
trigger. And, you go back to
minipool NAT only
10
when you see ID-NAT reactivity and you don't find
11
zero cases in a consecutive 3-4 day period or the
12
rate is less than 1/1000. So,
that was the trigger
13
because, you know, we wanted to be prepared this
14
year because last year it was on an ad hoc basis to
15
start ID-NAT testing in those hot areas. So, we
16
wanted to be prepared this year if these areas
17
become hot so that we get the logistics present
18
there so we can start without interruption of the
19
ID-NAT testing.
20 Next slide, please.
Now we come to 2004,
21
where are we now? As of July 20,
which is a couple
22
of days back--as you see, every week the numbers
14
1
keep changing. Last week there
were 108. This
2
week it is 182 human cases out of which there were
3 4
deaths. There are 2 from Arizona, 1
from Texas
4
and 1 from Iowa. Out of total
infections, 74
5
percent of cases are neuroinvasive West Nile
6
illness and 26 percent cases are West Nile fever.
7
At the moment there are 35 states endemic for West
8
Nile. This slide has been kindly
provided by Jen
9
Brown, from CDC, and other slides which I will
10
mention later.
11 The total number of presumptive West Nile
12
viremic donors reported to the CDC ArboNet--that is
13
why I highlighted this, is 23.
There are more
14
cases than that but, as you know, there is a delay
15
in reporting to the ArboNet from the health
16
departments. So, using minipool
NAT as well as
17
ID-NAT in select areas, starting on May 4. Out of
18
these 23 presumptive West Nile viremic donors, 21
19
are from Arizona. The majority
are from the
20
Maricopa county near Phoenix, in Arizona; 1 from
21
New Mexico and 1 from Iowa. But
this is the tip of
22
the iceberg.
15
1
Next slide, please. This slide, again, is
2
provided by Jen. You can see the
distribution of
3
the West Nile, both the animal, avian and mosquito
4
infection, which is in this color, and the blue
5
color shows you the human cases.
You can see it is
6
very high in Arizona and California.
I am telling
7
Mike Strong that it is creeping up in Washington
8
soon. So, he has been telling me
we don't see
9
anything and I said, well, wait and watch! As you
10
remember, in 1999, how this started and how it is
11
spreading and, you know, it just keeps on going. I
12
hope it will end up in the ocean sometime.
13 Next slide, please.
This is just to give
14
you how early the human cases can be detected. As
15
you see from the slide, the earliest one was in
16
April. So, you know, there is an
expansion of this
17
epidemic, it looks like. We were
told in the
18
textbooks it is mostly in August and September or
19
late July but you can see it as early as April now,
20
and last year we saw it as late as December, in the
21
middle of December. So, you
know, it is almost a
22
year-round activity now.
16
1 Next slide, please.
Thanks to all the
2
blood establishments and testing establishments, I
3
got these data from several folks and I will
4
acknowledge them as I speak. The
total number,
5
according to my calculations but this may not be
6
right, is 61 presumptive viremic donors reported,
7
starting in May, 2004. As I
said, some of them are
8
reported to ArboNet and some of them are not. So,
9
it is not in addition to that; it is inclusive of
10
the ArboNet reports. ARC has
told me--Sue Stramer
11
gave the data from June 16 to July 20, 7 hard
12
cases. Again, this is also in
the Arizona area.
13
But she says no region has their ID-NAT trigger.
14 Mike Strong gave me this data from Roche.
15
There are 2 positive confirmed by ID-NAT--around
16
300,000 donations screened.
17 BSL, Sally Caglioti and Mike Busch told me
18
that there are 23 confirmed, out of which 16 came
19
from minipool NAT and 7 came from ID-NAT, confirmed
20
positives. There are 14 pending
and he was saying
21
that some of them are ID-NAT and would have been
22
missed by minipool NAT. Also,
some of them are low
17
1
viremic and also there are some which are IgM
2
positive. The denominator is
around 400,000.
3 Gen-Probe, Leanne Kiviharju, gave the
4
data. These are non-ARC data but
I am not sure--I
5
sent an email to Leanne--whether this is also
6
non-BSL but I am not sure; maybe we can find out
7
from here, but 21 confirmed positive and 7 are
8
pending. I am glad that you guys
sent me several
9
slides. I was basically trying
to summarize what
10
the presumptive donors are and, you know, I really
11
appreciate your sending extra slides.
12 The Department of Defense, Ron Hagey sent
13
me the data which has 8 confirmed out of 62,774
14
since January of 2004.
15 So, you know, this is the majority of the
16
screening going on at this time and there may be a
17
few cases which have not been reported yet, but
18
this is where we stand as of today.
19 Next slide, please.
I just wanted to sort
20
of briefly remind you that FDA is still continuing
21
to work closely with the test kit manufacturers and
22
we would like to facilitate implementation of these
18
1
tests and expediter test licensure.
I just want to
2
remind you that we issued two guidances in October,
3
2002 and May, 2003. There are 3
INDs for West Nile
4
minipool-NAT. One is from Roche,
one from
5
Gen-Probe and one from ARC. This
is public
6
information. FDA is continuing
to work with the
7
AABB task force. I think that
has been a
8
wonderful, wonderful collaboration with the AABB
9
task force and the people on the task force are
10
really helpful in doing this project together, and
11
with the CDC, NIH help, and to monitor the epidemic
12
and monitor the testing.
13 Next slide, please.
Both ARC and BSL did
14 a
study, which is unpublished observation.
We had
15 a
small discussion at the task force on what they
16
found out in some of the viremic donors when they
17
followed up. They wanted to find
out what is the
18
rate of the disappearance of RNA when they convert
19
IgM and IgG. As you remember, in
the last years
20
before the testing started the literature was that
21
it can go as long as 28 days of viremia. But from
22
their studies, and I don't want to go into detail
19
1
here because these are unpublished and, you know, I
2
don't want to divulge information--the gist of that
3
was that what they found out in both cases is that
4
the viremia may last up to 49 days in one case and
5 39
days in the ARC study, and in the BSL 49 days,
6
and West Nile RNA may go coexist with IgM.
7
Therefore, this sort of started us thinking. In
8
the guidance document we put 28-day donor deferral
9
and so we may have to rethink the deferral for
10
that.
11 Next slide, please.
We have not discussed
12
it with the AABB task force but we will be
13
discussing with the task force that, you know, the
14
integration of West Nile testing information. We
15 are thinking about maybe 56-day deferral for
West
16
Nile diagnosis of symptoms, including headache and
17
fever, or 14 days after symptom resolution if it is
18
more than 56 days. Potential
reinstatement of
19
donor deferral for West Nile symptoms only
20
following 30 days without symptoms, and negative by
21
West Nile IgM or ID-NAT. Again,
this is current
22
thinking. We have nothing in the
works yet but we
20
1
have internal discussions, and we will discuss it
2
at our next regular AABB task force before we come
3
up with a recommendation. Dr.
Alan Williams is
4
spearheading this initiative.
5 Next slide, please.
With regard to our
6
activities in-house, as I mentioned last year also,
7
we are still working on the panel development. The
8
purpose is to monitor sensitivity of assays to
9
detect viral nucleic acid antibodies, and also
10
trying to isolate and characterize West Nile
11
strains from human samples during 2003 and 2002
12
epidemics. The purpose of this study, which is done
13
by Dr. Maria Rios in our group--and all these
14
studies actually really are done by Dr. Maria Rios'
15
group--is the genetic variation of viral strains;
16
detection by currently available West Nile assays.
17
The purpose is to really see if there is any
18
genetic variation and also infectivity studies
19
using animal models. Currently,
the samples have
20
been identified which could be used for infectivity
21
studies. However, there are
logistic issues about
22
the animals, baboons, which are being worked out
21
1
with the Southeast Medical Center.
I guess the
2
task force is working on that.
Hopefully, we will
3
get some information by fall and we will be set to
4
do those studies.
5 Next slide, please.
Briefly, they have
6
two isolates, NY99 in 2002, which have been
7
characterized by genetic sequencing which I can
8
show you in a minute. The viral
infectivity is
9
determined by in vitro studies using cell lines and
10
primary human blood cell cultures.
Final panel
11
specifications are being established through the
12
collaborative studies, and the range of
13
concentration ranges between 1000-5 copies/ml.
14 Next slide, please.
Just a piece of
15
information here that Maria was kind enough to
16
provide to me. You know, she did
the comparison of
17
the human 2002 strain and the NY99 flamingo isolate
18
and then passed through the Vero cells.
She found
19
there were 20 nucleotide mutations and one
20
insertion. The mutations are
distributed all
21
across the region which result in 5 amino acid
22
substitutions. She is
characterizing more isolates
22
1
and she already has 6 from 2002, 11 from 2003 and 6
2
from 2004. So, the purpose is to
really compare
3
and to see what the differences are and how those
4
differences impact on our tests.
5 Next slide please.
The outcome of the
6
panel testing--six laboratories participated in
7
that. She tells me there were no
false-positive
8
results reported. More
variability in detection
9
was found towards the lower end of the viral
10
concentration, i.e., 80 percent of the time
11
detected 100 copies/ml member but all laboratories
12
detected 100 percent of the time the panel members
13
of 500-1000 copies/ml. Further
testing is going to
14
define the consensus copy number.
15 Next slide, please.
This is the important
16
slide. I would like to thank all
the people who
17
really helped to make this talk possible. Jennifer
18
Brown, whom I have always been bugging to provide
19
the slides. Thank you,
Jennifer. Dr. Sue Stramer,
20
Dr. Mike Busch and Sally Caglioti, Dr. Mike Strong,
21
Leanne Kiviharju, Roland, Maria and all these
22
people--whoever I send an email they are kind
23
1
enough to respond quickly. Also
my colleagues at
2
the FDA, Maria Rios, Alan Williams, Dr. Epstein,
3
Martin Ruta, Indira Hewlett--always helping in this
4
whole project and, last but not the least, the AABB
5
task force. I am really, really
grateful to them
6
for providing all the information and helpful
7
discussion. Thank you very much.
8 DR. NELSON:
Thank you. Any questions or
9
comments? Yes?
10 DR. GOLDSMITH:
Do you have additional
11 data on the level of viremia in these samples that
12
you have been studying? What is
the maximum level
13
of viremia?
14 DR. NAKHASI:
Which samples are you
15
talking about?
16 DR. GOLDSMITH:
The ones that you
17
recovered from the viremic donors.
18 DR. NAKHASI:
From the viremic donors, I
19
don't know. Maria, do you know
what the levels
20
are?
21 DR. RIOS:
Between 10
5 and 106 is the high
22
level of viremia that we have found.
Are you
24
1
asking for the range of viremia or the high level
2
of viremia?
3 DR. GOLDSMITH:
I was just curious about
4
the high but it is fine to give the range.
5 DR. RIOS: It
varies. It varies. The
6
assays, in general, that use lower volumes do not
7
detect them. Assays that have higher
volume and
8
high throughput detect, but do not give accurate
9
quantitation, to 10
6 copies/ml.
10 DR. NELSON:
One of your slides had 23
11
positives with 16 by minipool and 7 by ID. Were
12
those 7 not detectable by minipool or was it just
13
that ID screening was triggered and they weren't
14
tested by minipool?
15 DR. NAKHASI: I
think they came for the
16
ID-NAT testing. Is that
true? Yes. You know, in
17
BSL they had already started ID-NAT testing in
18
Maricopa County. The trigger had
started earlier.
19 DR. NELSON:
So, they were negative by
20
minipool?
21 DR. STRONG:
No, the trigger was activated
22
and they started doing ID screening so they haven't
25
1
gone back yet, I think, to see if those would have
2
been picked up by minipool.
3
DR. BUSCH: Actually, 7/12 that were
4
picked up in the region that had been converted to
5
ID-NAT, 7 of them had been fully worked up and 5 of
6
those 7 are negative at 1:16 dilutions so they
7
would have been missed by minipool.
Of those 5, 1
8
of them is antibody negative and 4 have IgM and
9
IgG.
10 DR. NELSON:
Has anybody looked at the
11
characteristics of the donors that have low levels?
12
Are there host factors that might influence whether
13
somebody has high level or low level?
I know one
14
feature may be antibody but in those that are
15
antibody negative, I wonder if there are any donor
16
characteristics that influence the level of
17
viremia.
18 DR. BUSCH: Sue
has looked at that I think
19
more formally and there wasn't any correlation.
20
These are representative donors of the donor pool
21
in terms of the viremics, non-viremics and low
22
viremics. I think it is just by
chance. This
26
1
phase of early viremia is completely asymptomatic.
2 DR. RIOS: It
may have some inherited
3
characteristics that limit the viral replication.
4
The reason why we think that is because we have
5
performed some in vitro studies with human primary
6
macrophages and there is a great variability not
7
only in the day of the viral peak, but some
8
individuals can have a very steady and low titer
9
that doesn't progress to peak.
So, that indicates
10
that some inheritance variability may interfere
11
with replication.
12 DR. NELSON:
That is interesting. Other
13
questions?
14 DR. LAAL:
Unless I misunderstood, I
15
noticed that in 2003 we had a majority of your
16
isolates from people who had fever, and about
17
one-quarter were from neuroinvasive cases. In 2004
18
it is reversed.
19 DR. NAKHASI:
Yes, that is an important
20
point. I discussed it with the
CDC folks and they
21
said, you know, don't pay attention to that because
22
the fever cases were--you know, this year they are
27
1
paying more attention so some of the fever cases
2
were not real fever cases. You
are right, you saw
3
the switch.
4 DR. LAAL: But
then in the isolates that
5
you are picking up now for the genetic studies, are
6
you carefully making sure that you look at both
7
types?
8 DR. NAKHASI:
Maybe Maria can say; I don't
9
know.
10 DR. RIOS: The
isolates that have been
11
studied so far don't come from patients. Actually,
12
that is the effort we are going to move towards
13
now. They are identified through
the blood
14
screening. So, in order to
evaluate if there is
15
any isolate that may not be picked up by the blood
16
screening we need to acquire samples from cases
17
that are non-blood donors to investigate this
18
possibility.
19 DR. NELSON:
Yes, Mike?
20 DR. STRONG:
Just a quick comment on the
21
donors. In the studies that were
done last year,
22
many of the donors that were interviewed, in fact,
28
1
were symptomatic either shortly before or shortly
2
after their donations but the screening questions
3
just didn't pick them up.
4
IV. Hepatitis B Virus Nucleic Acid Testing (NAT)
5 for Donors of Whole Blood
6 DR. NELSON:
Thanks. The next topic is
7
hepatitis B virus nucleic acid testing for donors
8
of whole blood. Dr. Gerardo
Kaplan will introduce
9
this and give us background.
10 A. Introduction and Background
11 DR. KAPLAN:
Good morning.
12 [Slide]
13 I am Gerardo Kaplan, Chief of the Lab of
14
Hepatitis and Related Virus Emerging Agents. I am
15
with the Office of Blood, and I will introduce for
16
you the hepatitis B virus n nucleic acid testing
17
for donors of whole blood.
18 [Slide]
19 The general agenda for this meeting is
20
that after the introduction and background, Dr.
21
Blaine Hollinger will give us an update on the
22
serology of hepatitis G. This
will be followed by
29
1
two presentations from the Roche Molecular Systems
2
and their preclinical and clinical data in support
3
of their application. Finally, I
will come back to
4
give you the FDA perspective on hepatitis B MP-NAT
5
and present the questions for the committee. I
6
understand that there will be a break and then a
7
public hearing.
8 [Slide]
9 So, the issue is that the FDA is seeking
10
the opinion of the committee on the performance of
11
the Roche COBAS AmpliScreen HBV test in minipools
12
of 24 samples to screen blood for transfusion by
13
nucleic acid testing, and its proposed intended use
14
as an alternative to hepatitis B surface antigen
15
testing in conjunction with testing for antibodies
16
to hepatitis B core antigen.
17 [Slide]
18 In support of their claims, Roche
19
Molecular Systems performed a clinical trial. The
20
study objectives of the clinical trial were to
21
determine whether the COBAS AmpliScreen test, which
22
is a minipool of 24 samples of plasma from
30
1
volunteer blood donors, can detect hepatitis by DNA
2
in hepatitis B surface antigen-anti-core negative
3
window period cases. This is the
primary objective
4
of the study. In hepatitis B
surface
5
antigen-positive donors, who are acutely infected
6
or chronic carries, and in persons previously
7 exposed
to hepatitis B as the secondary objective.
8 [Slide]
9 During the clinical trial, Roche Molecular
10
Systems identified two window period cases in about
11
600,000 volunteer whole because donations screened
12
by hepatitis B NAT using their minipools of 24
13
samples.
14 RMS, Roche Molecular Systems, claims that
15
the use of the COBAS AmpliScreen HBV test in
16
conjunction with the anti-core test would reduced
17
the residual risk of transfusion-transmitted
18
hepatitis B, and also that this test, the COBAS
19
AmpliScreen, could be used as an alternative to the
20
commonly used hepatitis B surface antigen donor
21
screening test. I would like to
point out that
22
blood in the U.S. is currently being tested by
31
1
surface antigen and core antibodies.
2 [Slide]
3 So, we would like to request comment of
4 the
committee on three questions.
Basically, the
5
firs would be do the sensitivity and specificity of
6
the Roche COBAS AmpliScreen hepatitis B test in
7
minipools of 24 samples support licensing of the
8
assay as a donor screen?
9 [Slide]
10 If so, assuming continued use of screening
11
tests for anti-hepatitis B-core, do the data
12
support use of the Roche COBAS AmpliScreen
13
hepatitis B test in minipools of 24 samples to
14
screen blood for transfusion as an equivalent
15
alternative to the surface test?
If not, which
16
studies would be required to validated such a new
17
test?
18 The third question is do the data support
19
use of the Roche COBAS AmpliScreen hepatitis B test
20
on minipools of 24 samples to screen blood for
21
transfusion as an added test in conjunction with
22
licensed donor screening tests for hepatitis B
32
1
surface and anti-core?
2 Now I would like to introduce Dr. Blaine
3
Hollinger. He will give us an
update on hepatitis
4 B
serology.
5 B. Serological Course of Hepatitis B
6 DR. HOLLINGER:
Thank you, Gerardo. It is
7
always a pleasure to come to these meetings and I
8
always tend to learn more than I think anyone here
9
because there is always so much information.
10 [Slide]
11 The talk today is about serology, and
12
serology can be confusing. It is
confusing to our
13
GI residents and fellows in trying to determine
14
what happens after hepatitis B infection. The
15
clinical and serologic changes that occur following
16
infection represent a complex interaction between
17
the host, the virus and specific antigens. If you
18
have an understanding of these items, I think it
19
becomes very easy to understand what happens.
20 There are certain changes that occur after
21
infection with all viruses that seem to be very
22
similar. Viruses are either
enveloped or
33
1
non-enveloped. Hepatitis B virus
happens outcome
2
have a lipoprotein envelope that contains hepatitis
3 B
surface antigen as the envelope protein.
There
4
are also some other particles in this serum which
5
are seen in excess of the infectious virion, and
6
these are the small particles here, and these
7
tubular forms which actually come off, in many
8
cases, from the hepatitis B virion.
9 The inside, or the nucleocapsid of the
10
virion is comprised of the hepatitis B core
11
antigen, and this encloses a relaxed, circular,
12
partially double-stranded DNA molecule.
Another
13
antigen which is seen also is the hepatitis B
14
antigen, but this is not part of the virion in any
15
way. It is a secretory protein,
about 16-17 kd in
16
size, that is secreted during active infection, and
17
is representative usually of high concentrations of
18
virus in the bloodstream. We
don't really know
19
what is the reason for this particular antigen.
20 [Slide]
21 This is the HBe genome. It has four open
22
reading frames. One of them is
responsible for the
34
1
hepatitis B-surface antigen and is comprised of a
2
small, a medium and a large protein.
A second one
3
is the core gene which expresses the core-antigen,
4
the hepatitis B core-antigen and also the e-antigen
5
as well. There is a DNA
polymerase that is
6
important for the replication of this virus, and
7 there is an x-gene here
which is very important for
8
initiation and probably maintenance of the
9
infection. It is probably also
weakly oncogenic as
10
well. Now, once one understands
these things, you
11
can then start to see what happens after an
12
infection.
13 Next slide, please.
This slide shows what
14
happens in the typical course--now, I am going to
15
talk about typical things here.
Certainly all of
16
us know about the exceptions and we have all seen
17
them at one time or another, but I think it is
18
important to deal right now with the typical
19
changes that can occur. Again
what happens, you
20
have a hepatocyte that is infected.
There is a
21
very short eclipse phase in which we would not see
22
virus in the hepatocyte. Then
viruses start to be
35
1
produced and are transported out of the cell.
2
Then, one sees initially HBV DNA in the
3
bloodstream. It precedes the
expression of
4
hepatitis B-surface antigen which then starts to
5
occur here very early in the course of the disease
6
and peaks usually during the acute phase of a
7
clinical illness.
8
What happens then in this
non-cytolytic
9
infection is that there are usually some holes that
10
are punched in the plasma membrane of a hepatocyte.
11
ALT, which is in the cytosol, aminotransferase
12
enzyme which is in the cytosol of hepatocytes, are
13
released into the bloodstream.
So, the ALT is
14
elevated in these patients and then follows the
15
clinical symptoms of anorexia, fatigue, jaundice,
16
etc.
17 Usually about the time the ALT begins to
18
appear, HBeAg and IgM anti-HBc are found. IgM anti
19
HBc appears in high titer or high concentration in
20
individuals as a response to the synthesis of
21
nucleocapsids and, therefore, represents active
22
viral replication. The IgM rises
during the early
36
1
courses of infection and then starts to disappear.
2
Usually by 4-6 months or so, or 6-9 months, the IgM
3
anti-HBc disappears, although it may be present for
4
up to 2 years in individuals, if you use very
5
sophisticated research tools.
6 Usually the HBV DNA disappears in the
7
acute infection at the time that a hepatitis
8
B-surface antigen disappears.
So, you have a
9
pattern here. HBV DNA first; HB
surface antigen,
10
and the HBsAg disappears and usually about that
11
time HBV DNA is gone, or at least is
12
non-detectable.
13 Again, another pattern appears. When
14
HBsAg disappears it is replaced by its antibody,
15
anti-HBs. Now, we know that
probably anti-HBs is
16
produced very early in the course of the infection,
17
even probably back in this area here, which results
18
in serum sickness, vasculitis or other things, but
19
you don't detect it because there is so much
20
hepatitis B surface antigen available so it is
21
non-detectable. But eventually
the surface antigen
22
goes; anti-HBs then is detected.
When HBeAg
37
1
disappears in the active infection, then anti-HBe
2
replaces it. Anti-HBe lasts in
most patients for a
3
long period of time but in about a third of the
4
patients disappears after about 6 months of
5
follow-up.
6 Of course, the IgM anti-HBc--there is a
7
switch-over between the IgM anti-HBc and IgG
8
anti-HBc. What is important to
recognize is that
9
the assay, the total anti-HBc assay, detects not
10
only IgM but IgG antibodies. It
is not an IgG
11
test; it detects both IgG and IgM.
So, whenever
12
IgM is present you ought to see the total anti-HBc
13
test positive.
14 Next slide, please.
This is an older
15 slide
I have but I think it helps us a little bit
16
understand the relationship of all these assays
17
that we are looking at. The EIA
assay and those
18
that are being developed can detect down to about a
19
tenth of a nanogram of HBsAg.
HBsAg circulates up
20
to 200 mcg or more per ml of blood.
These tests
21
really have an upper level of sensitivity of about
22 1
mcg/ml. So, usually they are at their
upper
38
1
limits of detection for most infections.
2 The second test that came along them were
3
the hybridization assays, the liquid phase and the
4
filter hybridization assays.
These could detect
5
down to a tenth to 1 pg of genomic equivalence in
6
the blood. At least, at 24 hours
if you have the
7
autoradiographs stay for maybe up to 5 days, you
8
can detect anywhere from 2- to 10-fold more virus
9
in the blood. So, they are
detecting about this
10
level here, somewhere between here and here, and 1
11
pg is equivalent to about 300,000 copies/ml. You
12
will see 280,000, 330,000 but let's just talk about
13
300,000 copies/ml. So, 1 pg is
here, 300,000,
14
30,000, 3,000 and 300 down at the femptogram
15
levels.
16 The PCR assays, which are somewhere
17
between 700-7,000 times more sensitive than
18
hybridization assays, can detect down to 50 copies
19
or less per ml. So, they are
down in this range,
20
here. As I said, this is
300,000, 3,000 and 300
21
copies/ml. This would be 30
copies/ml. These are
22
usually with nested PCRs or other assays, nucleic
39
1
acid--the tests that are available today.
2 So, you see the differences between these
3
assays. One might ask why is it
then that the EIA
4
tests are detecting HBsAg very closely to the HBV
5
DNA. Part of the reason for that
is that there are
6
anywhere from 1,000 to 10,000 times more--at least
7
10,000 times more hepatitis B surface antigen
8
particles per infectious virion, and there may be
9
even more naked HBV particles.
So, you have a lot
10
more HBsAg produced initially than you do
11
infectious virions. That is the
reason I think
12
that there is not a great deal of difference, at
13
least initially, in the detection of these
14
particles.
15 Next slide, please.
So, during the course
16
of infection HBV DNA is detected from 2-5 weeks
17
after infection and up to 40 days before the HBsAg
18
is detected. However, there is a
wide coefficient
19
here of variation but the mean of that is around
20
6-15 days, and there are some exceptions to this.
21
It rises slowly during the course of infection at a
22
relatively low level, say 10
2 to 104
copies/ml
40
1
during the seronegative period, that is, before the
2
HBsAg appears.
3 Next slide, please.
HBsAg, on the other
4
hand, appears 1-3 weeks before the ALT becomes
5
abnormal or 3-5 weeks before the onset of symptoms
6
or jaundice. It reaches a peak
during the acute
7
stage of the disease and then it declines to
8
undetectable levels within 4-6 months.
9 Next slide.
IgM anti-HBc is indicative,
10 as I said, of ongoing viral replication and appears
11
at the onset of ALT abnormality at high
12
concentration. It is present but
undetectable in
13
some chronic infections and may reappear,
14
therefore, during reactivation of HBV during
15
chronic infection.
16 Now, one of the questions that often
17
arises is when you have acute hepatitis how do you
18
determine that this is not a reactivation of
19
chronic disease compared to an acute disease? That
20
has always been an issue. For
all practical
21
purposes, the IgM anti-HBc test can be utilized to
22
determine that. It is at high
concentrations.
41
1
Whereas, patients who have reactivation of their
2
hepatitis B virus infection from chronic disease
3
often have a relatively low concentration of IgM
4
anti-HBc in their test. We use a
sample to cut-off
5
ratio and it is usually somewhere between 1-3 in
6
those cases, whereas in acute disease it is at its
7
maximum.
8 In addition, the other way, if you have
9
the means to do this, is that the IgM has a 19S
10
sedimentation coefficient during acute infection.
11
It has a 7S sedimentation coefficient during
12
chronic infection. That is
another way that one
13
could use to determine acute from chronic.
14 Next slide, please.
The anti-HBs is a
15
neutralizing antibody occurring during recovery and
16
after infection, and in most cases indicates
17
protection against reinfection.
However, it may
18
become undetectable in up to 20 percent of patients
19
after several years.
20 Next slide.
This slide sort of shows what
21
happens in a patient who gets acute disease and
22
gets over it. The anti-core is a
very strong
42
1
antibody, high concentration of antibody compared
2
to anti-HBs. Over time, as I
said, in about 20
3
percent of patients this antibody will disappear.
4
Then you are left with a person who has only an
5
anti-HBc response.
6 Next slide.
One of the ways that one can
7
tell that that is present is you can do an HBsAg
8
vaccine challenge. You can give
them a vaccine.
9
About 2-4 weeks later you have them come back in
10
for a quantitative anti-HBs test and if the
11
response is greater than 10 milli-international
12
units/ml, that is indicative that this person
13
probably had a prior infection and was immune. It
14
is unusual for a susceptible person or a person
15
with a low-level infection to respond to the
16
hepatitis B surface antigen by 2-4 weeks. Probably
17
less than 3 percent in 2 weeks will respond to the
18
vaccine at this particular level.
19 Next slide. I
have talked a little bit
20
about chronic infection. The
difference is that
21
arbitrarily, say, if the HBsAg is still positive
22
after 6 months or the person has ALT abnormalities
43
1
for a period of time, then they probably have
2
chronic infection. In addition,
the HBsAg is at
3
very high concentrations through that period of
4
time. It doesn't start to
decline. So, if you
5
could dilute these samples as a patient is being
6
followed along, you will find that the HBsAg
7
concentration is declining. Just
remember that the
8
upper level of their reference is about 1 mcg/ml so
9
you do have to do some dilutions in order to see
10
this happening. The IgM does
disappear but remains
11
usually positive at very low levels.
With research
12
tools you can detect it in most patients. It just
13
isn't positive in the way the test is done, which
14
is to dilute the sample about 1:1000 or 1:2000.
15
That is why you don't see it in these individuals.
16
That is how the test is configured.
Part of that
17
is because of prozone effects and other things
18
which could make a positive test negative if you
19
did not dilute.
20 E antigen is usually present initially,
21
but over time about 5-10 percent of patients will
22
seroconvert from HBeAg positivity to anti-HBe
44
1
positive. During that period of
time they usually
2
show reactivation of their disease.
Often it is
3
just an elevation of the liver enzymes but they may
4
become jaundiced and they may develop symptoms that
5
look just like acute disease.
Until we understood
6
this, this was one of the reasons we used to think
7
that 10 percent of patients who had acute disease
8
would become chronically infected.
Now that we
9
know that many of these patients were chronically
10
infected to start with, we now feel that probably
11
less than 3 percent of the immunocompetent patients
12
who develop acute disease will actually become
13
chronically infected. Of course,
the anti-core and
14
HBsAg remain positive in most patients.
15 Next slide, please.
Let me just go
16
through, finally, some of the findings that we just
17
talked about. This is HBVd and a
surface antigen,
18
anti-HBc and anti-HBs. You can
see in the
19
pre-seroconversion window period--we have a couple
20
of windows here because we used to talk about a
21
window period between the end of the HBsAg phase
22
and the development of anti-HBs in which the IgM
45
1
anti-core is present during acute disease. But
2
here I am talking about the pre-seroconversion of
3
antibodies or the seronegative, if you will, window
4
period.
5 Then, in the early acute infection both
6
the HBVd and a and HBsAg are positive.
The
7
anti-core and the anti-HBs are negative. The
8
presence of HBsAg is indicative of a hepatitis B
9
infection, either acute or chronic.
Just the HBsAg
10
alone--you can't tell. But the
presence of all
11
three of these together in the absence of anti-HBs
12
indicates an HBV infection, either acute or
13
chronic. Eventually you will
lose these markers
14
and you are left with anti-HBc and anti-HBs, which
15
means a previous infection with immunity.
16 Next slide.
The other findings are in
17
individuals who have a solitary anti-HBc test
18
present. They have no anti-HBs
and no HBsAg. Some
19
of them may contain HBV DNA and these represent
20
low-level carriers which do not have enough surface
21
antigen present in the blood to be detectable by
22
the current assays.
46
1 The other thing is that if this is
2
negative, this could also indicate an early
3
convalescent period in which this anti-HBc will be
4
IgM. It could represent an HBV
infection in the
5
remote past, as we talked about, in which the
6
anti-HBs has disappeared and you could do a vaccine
7
challenge, or it could be in many cases a
8
false-positive reaction. Most of
these reactions
9
show anti-core at a very low level, again, a sample
10
to cut-off ratio somewhere between 1-3.
The
11
anti-HBe is usually absent in these individuals as
12
well, and they don't respond to the vaccine
13
challenge.
14 Then you have a group that have no
15
markers. This usually excludes
an HBV infection in
16
this case. Then you have
individuals with anti-HBs
17
only. This represents a vaccine
type response. It
18
is really unusual to see something else happening,
19
or you shouldn't see anything other than anti-HBs
20
in a patient who gets the vaccine because it only
21
contains HBsAg.
22 Next slide.
This is my final slide. It
47
1
looks at discordant or unusual hepatitis B
2
serologic profiles requiring further evaluation. I
3
have probably seen all of these at some time or
4
another in my career. For
example, I have a
5
patient right now who has HBsAg positive only, who
6
is anti-core negative, with 900 million copies or
7
IU of virus per ml of blood. He
has been like that
8
most of his life. It happens in
some young
9
children who get hepatitis B and become chronically
10
infected. It is seen in other
adults, particularly
11
in Asians. But it is a really
unusual phenomenon.
12
So, that is a possibility but really rare.
13 Finding of all these three markers in one
14
patient does occur in about 5-10 percent of
15
patients. It is mostly in drug
users or people who
16
have been exposed to different genotypes of the
17
virus. It could be found in
people who have been
18 vaccinated and have made antibodies to a
different
19
genotype, and it usually is in patients who have
20
more serious liver disease.
21 Anti-HBs or anti-HBc positive only--we
22
have talked about those phenomena.
The are not so
48
1
uncommon. HBsAg negative
individuals who are HBeAg
2
positive--you shouldn't really see that but I have
3
seen at least two cases that have been HBeAg
4
positive, HBV DNA negative but do not have the
5
presence of surface antigen present.
6 You could have patients who are positive
7
for both e antigen and anti-e at the same time.
8
That has to do with the nuances of the test and
9 probably nothing else. And, you can find patients
10
who are anti-core negative--I mean, you should not
11
find a patient who is anti-HBc negative but IgM
12
anti-HBc positive.
13 Well, I hope now you are a little bit more
14 familiar with the serology of this disease.
15
Antigens are followed by antibodies.
HBV DNA
16
precedes the development of antigens very early in
17
the course and usually remains throughout the
18
disease entity itself. Thank you
very much.
19 DR. NELSON:
Thanks, Blaine. Are there
20
any questions? Harvey?
21 DR. KLEIN:
Blaine, there have been a
22
number of reports of people who have low levels of
49
1
HBV DNA and have anti-HBs. Do
you know if any of
2
those are infectious? Have you
ever seen one?
3 DR. HOLLINGER:
Well, it is not whether we
4
have ever seen one. The issue I
guess is that we
5 have
this question all the time about occult
6
infection in HBV DNA even though there are no
7
markers, usually in people who are very sick and
8
would not be donors, for example, liver cancer
9
patients and immunocompromised individuals. So,
10
you wouldn't find these as donors anyway. It is my
11
belief that most of these issues of finding nucleic
12
acid in the presence of antibodies probably means
13
it is neutralized and it is not infectious. You
14
see that with RNA found very late in the course of
15
the disease. In the presence of
antibody it
16
doesn't appear to be infectious biologically,
17
clinically or in trials.
18 So, I think that finding anti-HBs at a
19
reasonable concentration and HBV DNA would probably
20
not indicate somebody is infectious.
But you just
21
have to do these studies, and no one has really,
22
say, taken a chimpanzee and looked at these. I
50
1
think Prince did so a few years ago and the data
2
was that they were not infectious.
3 DR. NELSON:
You didn't mention the
4
genetic variations in the surface antigen. Could
5
those lead to a false-negative surface antigen test
6
in people who were actually infectious?
7 DR. HOLLINGER:
Yes, Kenrad, it is a good
8
question. There are about six or
seven genotypes
9
of this disease, from a to h, but because they all
10
have a group a antigen present, they all seem to be
11
detectable by the usual tests which are available
12
today. Now, could it
happen? Sure, I think it is
13
possible but I think it would be unusual.
14 DR. NELSON:
One other comment too, we
15
have studied hepatitis B in injection drug users
16
and it is extremely common for them to have
17
hepatitis B core antibody only, without surface, at
18
very high levels. They are
actually truly infected
19
and it is up to 20 percent of injection drug users.
20
It is possible that co-infection with hepatitis C
21
may play a part in that because they are all
22
infected with hepatitis C as well.
It is a very
51
1
complex interaction. But seeing
hepatitis B core
2
antibody only in somebody who actually is a drug
3
user and comparing drug users with others without a
4
history, it is like 20 percent of the drug users,
5
maybe 1 or 2 percent in gay men who have had
6
hepatitis B infection.
7 DR. HOLLINGER:
Yes, you see it not only
8
in drug users but you see it in volunteer donors
9
who are found to be anti-HCV positive and then you
10
go do some other tests and they are found to be
11
anti-HBc positive only. They
don't respond well to
12
the vaccine. And, we know that
HCV interferes with
13
the replication of hepatitis B virus so that is a
14
possibility.
15
DR. NELSON: Other comments?
16 [No response]
17 Thanks. Dr.
Herman, from Roche?
18
C. Preclinical and Clinical Data for HBV MP NAT
19 DR. HERMAN:
Thank you very much. It is a
20
pleasure to be here to describe to you the results
21
of our non-clinical and clinical performance
22
studies on our COBAS AmpliScreen HBV test.
52
1 [Slide]
2 I am going to begin the talk with a
3
description of our non-clinical performance
4
studies, and Dr. Frank will conclude with a
5
description of our clinical study results.
6 [Slide]
7 Here is an outline of the talk. I am
8
going to give an overview of the COBAS AmpliScreen
9
system and then I am going to describe the
10
different portions of the non-clinical performance
11
studies and give you their results.
12 [Slide]
13
The COBAS AmpliScreen
system is designed
14
for screening of minipool samples or individual
15
donor samples. The samples are
put onto the
16
Hamilton microlab pipetting robot which prepares
17
the pools. Then the pooled or
individual samples
18
are processed to extract nucleic acid with the
19
generic sample processing method.
There are two
20
variations of the method, the multiprep method for
21
the pooled samples and the standard method for
22
individual donor samples, and I will describe them
53
1
in the next slide.
2 Aliquots of the extracted material can be
3
processed in parallel with our three different
4
COBAS AmpliScreen tests, the test for HBV and the
5
licensed tests for HCV and HIV.
The analysis is
6
done on the COBAS Amplicor analyzer which automates
7
the nucleic acid amplification and detection
8
processes. Then, the software
for the analyzer and
9
the software for the pipetting machine interact
10
with the data output management system.
11 [Slide]
12 This slide describes the two sample
13
preparation methods, the multiprep method which is
14
used for the minipools, and the standard method
15
that is used for individual donor samples. For the
16
minipool method, 1 ml of the pool is centrifuged at
17
23,500 g to enrich for the viral targets, HCV, HIV
18
and HBV. After the centrifugation,
900 mcL of the
19
supernatant is discarded, leaving behind the pellet
20
and 100 mcL of the supernatant.
The nucleic acids
21
are extracted by adding a k-atropic lysis reagent
22
which contains the internal control.
After a brief
54
1
incubation, isopropanol is added to precipitate the
2
nucleic acids. The nucleic acids
are collected by
3
centrifugation. The pellet is
washed with ethanol
4
and resuspended in a specimen diluent, and then an
5
aliquot of the specimen diluent can be used in each
6
of the AmpliScreen tests.
7 The standard specimen processing method
8
for individual samples is almost identical. All
9
the green steps are identical and the differences
10
are highlighted in red. So, the
starting specimen
11
volume is 200 mcL instead of 1 ml, and there is no
12
concentration step. The
k-atropic lysis reagent
13
with the internal control is added directly to the
14
200 mcL specimen and then the remaining steps are
15
the same.
16 [Slide]
17 Now I am going to describe the analytical
18
sensitivity studies that were performed. These are
19 the results using the multiprep procedure. We used
20
the World Health Organization HBV DNA international
21
standard and we prepared dilutions of it between
22
100 and 3 IU/ml and analyzed 120 replicates of each
55
1
dilution, at Roche, using 2 different kit lots.
2
This shows the results. So, we
had 100 percent hit
3
rate at 100, 30 and 10 IU/ml and a 95.8 percent hit
4
rate at 5 IU/ml. The predicted
95 percent limit of
5
detection, using the PROBIT statistical method, is
6
4.4 IU/ml.
7 [Slide]
8 This slide shows the results using the
9
standard specimen processing procedure.
In this
10
study we analyzed dilutions of the World Health
11
Organization standard from 300 to 10 IU/ml. There
12
was 100 percent hit rate on 100 replicates at 300
13
and 100 IU/ml, and 99 percent on 30 IU/ml, and 97
14
percent at 20, and 95.8 percent at 15 IU/ml. The
15
predicted 95 percent limit of detection, using the
16
PROBIT method, is 16 IU/ml for the standard
17
specimen processing method.
18 [Slide]
19 This slide describes the results on a
20
panel prepared by CBER. The
original panel
21
contained 3 members at 100, 10 and 0 copies/ml, and
22
at Roche we prepared 4 additional dilutions from
56
1
the 100 copy/ml member at 50, 25 5 and 2.5
2
copies/ml.
3 This slide shows the results using the
4
multiprep specimen processing method and on 6
5
replicates, 100 percent hit rate at 100 copies and
6
at 10 copies/ml, then 67 percent and 42 percent
7
hits at 5 and 2.5 copies/ml.
8 Using the standard specimen preparation
9
method, 100 percent hits at 100 copies/ml with 6
10
replicates and 92 percent and 75 percent at 50 and
11
25 copies/ml.
12 [Slide]
13 This slide shows the results of our
14
analysis of the performance of the test on HBV
15
genotypes A through H. These
samples were obtained
16
from commercial sources, and we analyzed up to 25
17
individual isolates for each genotype.
The samples
18
were quantified using the COBAS Amplicor HBV
19
monitor test or, in the case of genotypes G and H,
20
monitor tests that we have in development. Then
21
the samples were diluted to approximately 2-3 times
22
the limit of detection for the multiprep method and
57
1
the standard prep method, and then they were
2
analyzed using the COBAS AmpliScreen test. So,
3
with the multiprep method and the standard method
4
all the isolates yielded positive results. So, the
5
test detected HBV genotypes A through H.
6 [Slide]
7 This slide summarizes the results on 40
8
commercially obtained seroconversion panels using
9
the multiprep method and the standard prep method.
10
The slide shows the number of days that DNA was
11
detected prior to detection of surface antigen
12
using a licensed surface antigen test, the Ortho
13
surface antigen test system 3.
The orange bars
14
show the results with the multiprep test, and for
15
that analysis the samples were diluted 24-fold to
16
simulate minipool testing. The
blue bars show the
17
results with the standard prep on undiluted
18 samples. The panels are sorted by the number of
19
days prior to antigen that DNA is detected with the
20
multiprep method. So, using the
multiprep method,
21
in 38/40 panels HBV DNA was detected prior to
22
surface antigen, and in 2/40 panels HBV DNA was
58
1
detected in the same bleed as surface antigen.
2 Using the standard prep method on neat
3
samples in 39/40 panels HBV DNA was detected prior
4
to surface antigen, and in 1 panel HBV DNA was
5
detected on the same day as surface antigen. I am
6
going to show you the results on one of the panels,
7
this panel, 39.
8 Before that, with the multiprep method, on
9 the 38 panels on which
DNA was detected prior to
10
surface antigen, DNA was detected an average of 17
<