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Table of Contents

Table of Contents


TABLE OF CONTENTS

Introduction....................................................................................................................

Goals and Objectives..................................................................................................

Methodology.................................................................................................................

Table of Antimicrobics.................................................................................................

Table 1. Top 15 serotypes..........................................................................................

Table 2. Distribution of isolates..................................................................................

Table 3. Total % sensitive, intermediate, resistant.................................................

Table 4. Total % resistance by species/sources ....................................................

Table 5. % resistance for non-clinical isolates.........................................................

Table 6. % resistance for HACCP samples..............................................................

Table 7. % resistance for clinical isolates.................................................................

Table 8. % resistance for top 15 serotypes...............................................................

Table 9. Multiple antimicrobial resistance.................................................................

Table 10. Most frequent resistance patterns.............................................................

Table 11. Most frequent resistance patterns for 5 or more antimicrobics.............

Table 12. Total number ACSSuT...............................................................................

 

 

INTRODUCTION

The emergence of resistance to antimicrobics has compromised control of many bacterial pathogens and is a global problem. Additionally, multiple resistance has emerged among many bacterial strains including Salmonella species. A penta-resistant strain of Salmonella typhimurium DT104 in which the resistance genes have been chromosomally integrated is proving to be particularly problematic resulting in increased morbidity and mortality in both animals and humans.

The development of resistant human pathogenic bacteria may result from direct use of antimicrobial agents in humans and animals and acquisition of resistant organisms or resistance factors from animal and environmental bacteria. The intestinal flora of animals that have been exposed to antimicrobial agents can serve as a reservoir of resistant bacteria.

Because of the public health concerns associated with the use of antimicrobics in food-producing animals, an antimicrobial resistance monitoring program was proposed by the Food and Drug Administration Center for Veterinary Medicine (FDA) as a post-marketing activity to help ensure the continued safety and efficacy of veterinary antimicrobics. In 1996, the CDC, the USDA, and the FDA established the National Antimicrobial Susceptibility Monitoring System to prospectively monitor changes in antimicrobial susceptibilities of zoonotic pathogens from human and animal clinical specimens, from healthy farm animals, and from carcasses of food-producing animals at slaughter. Non-typhoid Salmonella was selected as the sentinel organism.

Veterinary testing is conducted at USDA's Agricultural Research Service Russell Research Center in Athens, GA. Testing is done using a semi-automated system (SensititreTM Accumed, Westlake Ohio). This report summarizes the percentage of isolates collected during calendar year 1997 that were susceptible, intermediate, or resistant to 17 antimicrobics (n=2,391). The 17 antimicrobics were chosen to be representative of common antimicrobics (or classes of antimicrobics) used in animal and human medicine. A subsequent report will summarize the minimal inhibitory concentrations obtained for these isolates and will provide a discussion of the data. Questions regarding this report should be directed to any of the people listed below.

Paula J. Fedorka-Cray, PhD
USDA-ARS-RRC, Athens, GA
706-546-3305

Marissa Miller, DVM, MPH and Linda Tollefson, DVM, MPH
FDA-CVM, Rockville, MD
301-827-0186

David A. Dargatz, DVM, PhD and Nora E. Wineland, DVM, MS
USDA-APHIS-VS-CEAH, Fort Collins, CO
970-490-8000

 

GOALS AND OBJECTIVES

 

The goals and objectives of the monitoring program are to:

1) provide descriptive data on the extent and temporal trends of antimicrobial susceptibility in Salmonella and other enteric organisms from the human and animal populations;

2) facilitate the identification of resistance in humans and animals as it arises;

3) provide timely information to veterinarians and physicians;

4) prolong the life span of approved drugs by promoting the prudent and judicious use of antimicrobics; and

5) identify areas for more detailed investigation.

Information resulting from the monitoring program and follow-up outbreak investigations will be distributed to veterinarians, physicians, and food animal producer groups. Use of the information will be targeted to redirecting drug use so as to diminish the development and spread of resistance over the short term with directives involving long-term use developed in collaboration with the appropriate professional practitioner groups. Outbreak investigations and field studies will be initiated as a result of major shifts or changes in resistance patterns in either animal or human isolates.

 

METHODOLOGY

 

Isolation:

Salmonella isolates with known serotypes are struck onto 5% sheep blood agar (SBA) plates for isolation. Plates are incubates at 37oC overnight. The following morning one well-isolated colony from each plate is picked and regrown on a second SBA plate which is incubated at 37oC overnight.

Screening for resistance:

One sterile dd H20 tube and 1 Mueller- Hinton broth (MHB) tube is set in a rack for each isolate. One substrate strip is added to each MHB for a minimum of 15 minutes prior to inoculation (Note: Once substrate strips are added to MHB tubes, they must be used within 1 hour or discarded). Two to six colonies from the second SBA are collected with a sterile cotton tipped swab and used to inoculate the water tube. The tube is vortexed and the density is adjusted with the Nephlometer as per manufacturer's instructions (Note: the machine is calibrated with a McFarland standard prior to starting the procedure). A 10 ml disposable loop from Sensititre is used to transfer 10 ml from the inoculated water to a MHB tube containing the substrate strip. The MHB tube is vortexed and placed into the auto inoculator (typically one isolate per microtiter plate) as per manufacturer's instructions. The microtiter plate is incubated at 37oC for 18 - 20 hours (Note: The time for reading plates is 18-20 h, ideally all plates are read as close to 18 hrs. as possible). Record the time the microtiter plate is inoculated and read on a sheet. Do NOT read plates or keep data from plates >20 h old). (Note: Ideally plates should not be stacked while in the incubator. If stacking is required, stack no more than 2 plates high.)

Microtiter plates are read as per manufacturer's instructions

Freezing clones:

Using a sterile disposable 1 ml inoculating loop 6 colonies from the second SBA plate are picked and inoculated (by vigorously shaking the loop to dislodge bacteria) into 1 ml LB broth plus 30% glycerol in cryo vials. The vials are stored frozen at -70oC and labeled with the following information:

Information Example
SURVEY AB CLONE
STUDY FSIS 95
ISOLATE # 2345
DATE 2/26/96

 

 

TABLE OF ANTIMICROBICS

 

Antimicrobic Antimicrobic Concentrations(ug/ml)* Breakpoint
Amikacin 4 - 32 64
Amoxicillin/Clavulanic Acid 0.5/0.25 - 32/16 32/16
Ampicillin 2 - 64 32
Apramycin 2 - 16 32
Ceftiofur 0.5 - 16 8
Ceftriaxone 0.25 - 16 64
Cephalothin 1 - 32 32
Chloramphenicol 4 - 32 32
Ciprofloxacin 0.015 - 2 4
Gentamicin 0.25 - 16 16
Kanamycin 16 - 64 64
Nalidixic Acid 4 - 64 32
Streptomycin 32 - 256 64
Sulfamethoxazole 128 - 512 512
Tetracycline 4 - 64 16
Ticarcillin 2 - 128 128
Trimethoprim/Sulfamethoxazole 0.12/2.4 - 4/76 4/76

* ranges were chosen to detect incremental changes in resistance based on previous 2 year data; ranges may be outside of the breakpoint value

RESULTS -
Veterinary Isolates

 

TABLE 1. Top 15 Salmonella serotypes identified for 1997 (N=2,391 total isolates) for all animal species

 

Serotype Serogroup Frequency (n) Percent of Total
Montevideo C1 221 9.2
Kentucky C3 177 7.4
Typhimurium (copenhagen)* B 171 7.2
Anatum E4 169 7.1
Typhimurium* B 157 6.6
Heidelberg B 146 6.1
Agona B 141 5.9
Cerro K 116 4.9
Mbandaka C1 92 3.8
Muenster E1 89 3.7
Derby B 70 2.9
Worthington G2 62 2.6
Menhaden E3 61 2.6
Meleagridis E1 57 2.4
Hadar C2 56 2.3

 

* typhimurium and typhimurium (copenhagen) isolates combined account for 328 (13.7%) of the total number of isolates

 

TABLE 2: Distribution of isolates by species and clinical status

CLINICAL (isolates collected from NVSL; N=763)


Species

Total Number
Cattle 183
Swine 195
Chicken 153
Exotic 65
Turkey 49
Dog 38
Horse 52
Cat 28

 

NONCLINICAL (N=1,628)

 

Species

Number

Cattle 859*
Swine 226
Cattle feed 2
Swine feed 20
HACCP** 521
Chicken 223
Turkey 153
Swine 110
Cattle 27
Egg 6
Misc*** 2

*includes 99 samples which are of unidentified clinical status **samples collected from carcasses at slaughter with the exception of eggs ***species unknown


TABLE 3: Total percent sensitive, intermediate or resistant

 

 

 

 

Susceptible

 

Intermediate

 

Resistant

 

Antimicrobic

 

n

 

%

 

n

 

%

 

n

 

%

 

Amikacin

 

2391

 

100

 

0

 

0

 

0

 

0

 

Amoxicillin/Clavulanic Acid

 

2215

 

92.6

 

134

 

5.6

 

42

 

1.8

 

Ampicillin

 

2104

 

88.0

 

0

 

0

 

287

 

12.0

 

Apramycin

 

2345

 

98.1

 

4

 

0.2

 

42

 

1.8

 

Ceftiofur

 

2367

 

99.0

 

2

 

0.1

 

22

 

0.9

 

Ceftriaxone

 

2374

 

99.3

 

11

 

0.5

 

6

 

0.3

 

Cephalothin

 

2281

 

95.4

 

54

 

2.3

 

56

 

2.3

 

Chloramphenicol

 

2273

 

95.1

 

8

 

0.3

 

110

 

4.6

 

Ciprofloxacin

 

2391

 

100

 

0

 

0

 

0

 

0

 

Gentamicin

 

2211

 

92.5

 

40

 

1.7

 

140

 

5.9

 

Kanamycin

 

2145

 

89.7

 

4

 

0.2

 

242

 

10.1

 

Nalidixic Acid

 

2372

 

99.2

 

0

 

0

 

18

 

0.8

 

Streptomycin

 

1970

 

82.4

 

0

 

0

 

421

 

17.6

 

Sulfamethoxazole

 

1968

 

82.3

 

0

 

0

 

423

 

17.7

 

Tetracycline

 

1727

 

72.2

 

8

 

0.3

 

656

 

27.4

 

Ticarcillin

 

2109

 

88.2

 

4

 

0.2

 

278

 

11.6

 

Trimethoprim/

Sulfamethoxazole

 

 

2341

 

 

97.9

 

 

0

 

 

0

 

 

50

 

 

2.1

 

TABLE 4: Percent total resistance by species/sources (includes both clinical and nonclinical isolates)

 

Antimicrobic Cattlen=1,069 Swinen=531 SPECIESChickenn=376 Turkeyn=202 Horsen=52
Amikacin 0 0 0 0 0
Amoxicillin/Clavulanic Acid 1.2 0.6 1.1 7.9 3.8
Ampicillin 9.4 12.4 11.2 19.3 19.2
Apramycin 0.1 6.6 0 2.0 0
Ceftiofur 0.1 0.4 0.3 6.4 1.9
Ceftriaxone 0.1 0 0 2.5 0
Cephalothin 1.6 0.8 2.4 8.9 7.7
Chloramphenicol 2.4 7.7 2.4 7.9 9.6
Ciprofloxacin 0 0 0 0 0
Gentamicin 0.4 4.9 14.6 24.3 7.7
Kanamycin 6.6 13.2 3.5 28.7 19.2
Nalidixic Acid 0 0 0.3 8.4 0
Streptomycin 9.7 22.8 22.3 38.6 17.3
Sulfamethoxazole 8.4 23.2 22.6 42.1 21.2
Tetracycline 14.0 49.9 18.1 59.4 23.1
Ticarcillin 8.9 12.4 11.2 18.3 19.2
Trimethoprim/Sulfamethoxazole 0.7 5.3 1.1 2.5 9.6

 

TABLE 4: Percent total resistance by species/sources (includes both clinical and nonclinical isolates; continued)

 

Antimicrobic CattleFeedn=2 SwineFeedn=20 SPECIESExoticn=65 Dogn=38 Catn=28 Eggn=6
Amikacin 0 0 0 0 0 0
Amoxicillin/Clavulanic Acid 0 5.0 0 0 10.7 0
Ampicillin 0 5.0 3.1 31.6 53.6 0
Apramycin 0 5.0 0 0 3.6 0
Ceftiofur 0 0 0 0 10.7 0
Ceftriaxone 0 0 0 0 0 0
Cephalothin 0 5.0 0 0 10.7 0
Chloramphenicol 0 0 0 13.2 28.6 0
Ciprofloxacin 0 0 0 0 0 0
Gentamicin 0 5.0 0 0 0 0
Kanamycin 0 10.0 3.1 18.4 32.1 0
Nalidixic Acid 0 0 0 0 0 0
Streptomycin 0 20.0 3.1 23.7 35.7 0
Sulfamethoxazole 0 5.0 3.1 31.6 50.0 0
Tetracycline 0 35.0 6.2 36.8 57.1 0
Ticarcillin 0 0 3.1 31.6 50.0 0
Trimethoprim/Sulfamethoxazole 0 0 1.5 0 0 0

Note: 2 isolates that were unidentified were not resistant to any antimicrobic

 

 

Table 5: Percent resistance for non-clinical isolates (excluding HACCP samples)

 

Antimicrobic Cattlen=760 Swinen=226
Amikacin 0 0
Amoxicillin/Clavulanic Acid 1.1 1.0
Ampicillin 4.1 1.3
Apramycin 0 11.1
Ceftiofur 0 0.4
Ceftriaxone 0 0
Cephalothin 1.7 1.0
Chloramphenicol 1.6 0
Ciprofloxacin 0 0
Gentamicin 0.1 6.6
Kanamycin 1.7 8.4
Nalidixic Acid 0 0
Streptomycin 4.1 7.5
Sulfamethoxazole 2.9 1.0
Tetracycline 8.0 27.9
Ticarcillin 3.6 1.3
Trimethoprim/Sulfamethoxazole 0.1 0

Note: Samples are included only if they were able to be identified as non-clinical. This does not include 99 samples of undetermined clinical status

 

Table 6: Percent resistance for HACCP samples

 

Antimicrobic Cattlen=27 Swinen=110 SPECIESChickenn=223 Turkeyn=153 Eggn=6
0 0 0 0 0
Amoxicillin/Clavulanic Acid 7.4 0 0.4 7.2 0
Ampicillin 22.2 15.5 11.7 13.7 0
Apramycin 0 2.7 0 0.7 0
Ceftiofur 0 0.9 0.4 5.9 0
Ceftriaxone 0 0 0 2.0 0
Cephalothin 0 0.9 1.3 7.8 0
Chloramphenicol 14.8 10.0 2.7 5.9 0
Ciprofloxacin 0 0 0 0 0
Gentamicin 0 1.8 17.9 18.3 0
Kanamycin 7.4 12.7 2.2 26.8 0
Nalidixic Acid 0 0 0 5.2 0
Streptomycin 22.2 26.4 24.7 35.9 0
Sulfamethoxazole 33.3 31.8 26.0 36.6 0
Tetracycline 37.0 50.0 21.5 56.2 0
Ticarcillin 22.2 15.5 11.7 13.7 0
Trimethoprim/Sulfamethoxazole 3.7 1.8 0.9 3.3 0

 

Table 7: Percent resistance for clinical isolates*

 

Antimicrobic Cattlen=183 Swinen=195 SPECIESChickenn=153 Turkeyn=49 Horsen=52
Amikacin 0 0 0 0 0
Amoxicillin/Clavulanic Acid 1.6 0.5 2.0 10.2 3.8
Ampicillin 32.2 23.6 10.5 36.7 19.2
Apramycin 0.5 3.6 0 6.1 0
Ceftiofur 0.5 0 0 8.2 1.9
Ceftriaxone 0.5 0 0 4.1 0
Cephalothin 1.6 0.5 3.9 12.2 7.7
Chloramphenicol 5.5 15.4 2.0 14.3 9.6
Ciprofloxacin 0 0 0 0 0
Gentamicin 2.2 4.6 9.8 42.9 7.7
Kanamycin 29.0 19.0 5.2 34.7 19.2
Nalidixic Acid 0 0 0.7 18.4 0
Streptomycin 33.9 38.5 19.0 46.9 17.3
Sulfamethoxazole 30.6 44.1 17.6 59.2 21.2
Tetracycline 36.6 75.4 13.1 69.4 23.1
Ticarcillin 31.7 23.6 10.5 32.7 19.2
Trimethoprim/Sulfamethoxazole 1.6 13.3 1.3 0 9.6

Note: Clinical isolates in Table 7 were all obtained from the National Veterinary Services Laboratories, Ames, IA

 

 

Table 7: Percent resistance for clinical isolates* (continued)

Antimicrobic Exoticn=65 SPECIESDogn=38 Catn=28
Amikacin 0 0 0
Amoxicillin/Clavulanic Acid 0 0 10.7
Ampicillin 3.1 31.6 53.6
Apramycin 0 0 3.6
Ceftiofur 0 0 10.7
Ceftriaxone 0 0 0
Cephalothin 0 0 10.7
Chloramphenicol 0 13.2 28.6
Ciprofloxacin 0 0 0
Gentamicin 0 0 0
Kanamycin 3.1 18.4 32.1
Nalidixic Acid 0 0 0
Streptomycin 3.1 23.7 35.7
Sulfamethoxazole 3.1 31.6 50.0
Tetracycline 6.2 36.8 57.1
Ticarcillin 3.1 31.6 50.0
Trimethoprim/Sulfamethoxazole 1.5 0 0

Note: Clinical isolates in Table 7 were all obtained from the National Veterinary Services Laboratories, Ames, IA

 

Table 8: Percent total resistance for the top 15 Salmonella serotypes from animal species/sources

Antimicrobic

Montevi.
n=221
Kentuckyn=177 SEROTYPETyph(cop)n=171 Anatumn=169 Typhim.n=157
Amikacin 0 0 0 0 0
Amoxicillin/Clavulanic Acid 0.5 1.7 4.7 0.6 7.0
Ampicillin 2.3 2.8 84.2 0.6 35.0
Apramycin 0 0 1.8 10.1 1.3
Ceftiofur 0.9 0 4.1 0 4.5
Ceftriaxone 0 0 1.2 0 1.3
Cephalothin 1.4 1.7 4.7 0.6 5.7
Chloramphenicol 0 0 36.8 0.6 20.4
Ciprofloxacin 0 0 0 0 0
Gentamicin 2.7 1.7 4.1 5.3 8.3
Kanamycin 1.8 1.7 49.7 0.6 19.1
Nalidixic Acid 0 0.6 2.9 0 1.9
Streptomycin 1.8 12.4 70.8 3.0