Science & Research
ArrayTrack™—a microarray database, data analysis & interpretation tool
Effective Jaunary 20, 2014, NCTR will temporarily suspend support for opening new ArrayTrack accounts for non-FDA users. If you have any questions, please contact NCTRBioinformaticsSupport@fda.hhs.gov
FDA Genomic Tool
- Free bioinformatics resource for DNA microarray and systems biology
- Manage, analyze, and interpret omics data within a single package
- Used by the FDA for the review of genomic data submissions
- ArrayTrack™ has averaged approximately 5000 user entries each year since 2003 when it was opened to the public
- Survey Of Microarray Databases
ArrayTrack™ provides an integrated solution for managing, analyzing, and interpreting microarray gene expression data. Specifically, ArrayTrack™ is MIAME (Minimum Information About A Microarray Experiment)-supportive for storing both microarray data and experiment parameters associated with a pharmacogenomics or toxicogenomics study. Many statistical and visualization tools are available with ArrayTrack™ which provides a rich collection of functional information about genes, proteins, and pathways for biological interpretation.
The primary emphasis of ArrayTrack™ is the direct linking of analysis results with functional information to facilitate the interaction between the choice of analysis methods and the biological relevance of analysis results. Using ArrayTrack™, users can easily select a statistical method applied to stored microarray data to determine a list of differentially expressed genes. The gene list can then be directly linked to pathways and gene ontology for functional analysis.
|ArrayExpress at EBI||24,838||708,914||October 28, 2011|
|ArrayTrack™||1,622||50,953||February 11, 2012|
|caArray at NCI||41||1,741||November 15, 2006|
|Gene Expression Omnibus - NCBI||25,859||641,770||October 28, 2011|
|Genevestigator database||2,500||65,000||January 2012|
|MUSC database||~45||555||April 1, 2007|
|Stanford Microarray database||82,542||Not reported||October 23, 2011|
|UNC Microarray database||~31||2,093||April 1, 2007|
|UNC modENCODE Microarray database||~6||180||July 17, 2009|
|UPenn RAD database||~100||~2,500||September 1, 2007|
|UPSC-BASE||~100||Not reported||November 15, 2007|
*Information Source: wikipedia.com
|Collaboration Information:||Dr. Weida Tong (870-543-7142 or firstname.lastname@example.org)|
|Assistance with Using ArrayTrack™:||Feng Qian (870-543-7290 or email@example.com)|
|Submit Suggestions:||Dr. Hong Fang (870-543-7538 or firstname.lastname@example.org)|
|Report Technical Problems:||NCTRBioinformaticsSupport@fda.hhs.gov|
ArrayTrack™ is a product designed and produced by the National Center for Toxicological Research (NCTR). FDA and NCTR retain ownership of this product.
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