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APPENDIX A – FY 2009 OSEL Publications

January 1, 2009 – December 31, 2009

Journal Articles

Badal A, Badano A. Accelerating Monte Carlo simulations of photon transport in a voxelized geometry using a massively parallel graphics processing unit. Medical Physics, 36(11):4878–4880, November 2009.

Badal A, Kyprianou IS, Phuc Banh D, Badano A, Sempau J. penMesh - Monte Carlo radiation transport simulation in a triangle mesh geometry. IEEE Transactions on Medical Imaging, 28(12):1894–1901, December 2009.

Badano A, Kyprianou IS, Freed M, Jennings RJ, Sempau J. Effect of oblique X-ray incidence in flat-panel computed tomography of the breast. IEEE Transactions on Medical Imaging, 28(5):696–702, May 2009.

Badano A. Effect of slow display on detectability when browsing large image datasets. Journal of the Society for Information Display, 17(11):891–896, November 2009.

Bassen HI, Mendoza G. In-vitro mapping of E fields induced near pacemaker leads by simulated MR gradient fields. BioMedical Engineering OnLine 2009, 8:39 (15 December 2009).

Brenner M, Coelho SG, Beer JZ, Miller SA, Wolber R, Smuda C, Hearing VJ. long-lasting molecular changes in human skin after repetitive in situ UV irradiation.  Journal of Investigational Dermatology 129:1002-1011, 2009.

Buckler AJ, Mozley PD, Schwartz L, Petrick N, McNitt-Gray M, Fenimore C, O’Donnell K, Hayes W, Kim HJ, Clarke L, Sullivan D. Volumetric CT in lung cancer: An example for the qualification of imaging as a biomarker. Academic Radiology, 17(01):107-115, 2010. DIAM 09-34.

Chang I.  Considerations for thermal injury analysis for RF ablation devices. Special Issue of the Open Biomedical Engineering Journal, vol 3-4, 2009.

Chang MS, Stohlman J, Molnar P, Natarajan A, Canavan H, Teliska M, Krauthamer V, Hickman J. Altered Calcium Dynamics in Cardiac Cells Grown on Silane-Modified Surfaces, Journal of Biomaterials.

Chiesa OA, vonBredow J, Li H, Smith M. Isobaric (gasless) laparoscopic liver and kidney biopsy in standing steers. Canadian Journal of Veterinary Research. 73(1):42-8, January 2009.

Chiesa OA, vonBredow J, Smith M, Thomas J. One-port video assisted laparoscopic kidney biopsy in standing steers.  Research in Veterinary Science. 87(1):133-4, August 2009.

Choi J, Zhang Q, Reipa V, Wang NS, Stratmeyer ME, Hitchins VM, Goering PL. Comparing the biological responses of photoluminescent silicon nanoparticles with silicon micron-sized particles in RAW 264.7 macrophages. Journal of Applied Toxicology 29:52-60, 2009.   
Civelek M, Grant GR, Irolla CR, Shi C, Riley RJ, Chiesa OA, Stoeckert CJ, Karanian JW, Pritchard WF, Davies PF. Pre-lesional arterial endothelial responses in hypercholesterolemia: Universal ABCA1 upregulation contrasts with region-specific gene expression in vivo. American Journal of Physiology: Heart and Circulatory Physiology, e-pub Nov 6, 2009.

Coelho SG, Zhou Y, Bushar HF, Miller SA, Zmudzka BZ, Hearing VJ, Beer JZ. long-lasting pigmentation of human skin: A new look at an overlooked response to UV. Pigment Cell and Melanoma Research 22:238-241, 2009.

Coelho SG, Choi W, Brenner M, Miyamura Y, Yamaguchi Y, Wolber R, Smuda C, Batzer J, Kolbe L, Ito S, Wakamatsu K, Zmudzka BZ, Beer JZ, Miller SA, Hearing VJ. Short- and long-term effects of ultraviolet radiation on the pigmentation of human skin.  J  Invest. Dermatology Symposium Proceedings. 14:32-35, 2009.

Cohen E.  Effect of high pulse rate train electrical stimulation on the light-evoked responses of retinal ganglion cells. Journal of Neural Engineering, 6:1-11.

Elespuru RK, Agarwal R, Aisar H. Atrakchi C, Bigger AH, Robert H., Heflich RH, Jagannath DR, Levy DD, Moore MM, Ouyang Y, Robison TW, Sotomayor RE, Cimino MC, Dearfield KL. Current and future application of genetic toxicity assays: the role and value of in vitro mammalian assays. Toxicological Sciences 109(2):172–179, 2009.

Espandiari P, Rosenzweig B, Zhang J, Zhou Y, Schnackenberg L, Vaidya VS, Goering PL, Bonventre JV, Mahjoob K, Portilla D, Beger RD, Thompson K, Hanig J, Sadrieh N. Age-related differences in susceptibility to cisplatin-induced renal toxicity. Published online at Journal of Applied Toxicology, October 2009.

Forrey C, Muthukumar M. Electrostatics of capsid-induced viral RNA organization. Journal of Chemical Physics (cover) 131:10, 2009.

Freed M, Miller S, Tang K, Badano A. Experimental validation of Monte Carlo (MANTIS) simulated x-ray response of columnar CsI scintillator screens. Medical Physics, 36(11):4944–4956, NOV 2009.

Gallas BD, Bandos A, Samuelson F, Wagner RF. A Framework for random-effects ROC analsysis: Biases with the Bootstrap and other variance estimators”, Commun Stat A-Theory 38(15), 2586-2603 (2009).

Garra BS, Locher M, Felker S, Wear KA. Measurements of ultrasonic backscattered spectral centroid shift from spine in vivo—methodology and preliminary results.  Ultrasound in Medicine and Biology 35(1):165-168, January 2009.

Gavrielides MA, Kinnard LM, Myers KJ, Petrick N. Volumetric studies for the assessment of lung nodules with thoracic CT imaging. Radiology, 251(1):26-37, 2009.

Gillum N, Karabekian Z, Swift LM, Brown RP, Kay MW, Sarvazyan N. Clinically relevant concentrations of di (2-ethylhexyl) phthalate (DEHP) uncouple cardiac syncytium. Toxicology and Applied Pharmacology. 236(1):25-38, 2009.

Godar DE, Landry RJ, Lucas AD. Increased UVA exposures and decreased cutaneous Vitamin D(3) levels may be responsible for the increasing incidence of melanoma. Medical Hypotheses  72(4):434-43. Epub 2009 Jan 19. PMID: 19155143 [PubMed - indexed for MEDLINE], April 2009. Related articles

Gray RA, Wikswo JP, Otani NF. Origin choice and petal loss in the flower garden of spiral wave tip trajectories. Chaos,19: 033118, 2009.  (This article was selected to appear in the Virtual Journal of Biological Physics Research)

Guerraty MA, Grant G, Karanian JW, Chiesa OA, Pritchard WF, Davies PF. Spatially resolved transcript profiling reveals that brief hypercholesterolemia induces side-specific protective changes in swine aortic valve endothelium. Arteriosclerosis, Thrombosis and Vascular Biology, e-pub Nov 19, 2009.

Guerraty MA, Grant GR, Karanian JW, Chiesa OA, Pritchard WF, Davies PF. Hypercholesterolemia induces side-specific phenotypic changes and peroxisome proliferator-activated receptor-{gamma} pathway activation in swine aortic valve endothelium. Arteriosclerosis Thrombosis and Vascular Biology. November 19, 2009.

Hakim BM, Beard BB, Davis CC. Precision dielectric property measurements using a rectangular waveguide. Measurement Science and Technology, 20(4), 2009.

Herold KE, Rasooly A. A charge-coupled device based optical detector for Lab-on-a-chip. Lab-on-a-Chip Technology: Fabrication and Microfluidics, 1:239-249, 2009.

Hoffer K, Calogero D, Faaland R, Ilev I. Precise testing of the dioptric power accuracy of exact-power-labeled intraocular lenses. Journal of Cataract and Refractive Surgery, 35:1995-1999 (2009).

Karanian J, Abi-Jaoudeh N, Glossop N, Cleary K, Chiesa A, Dreher M, Pritchard W, Wood BJ. Translational technologies in EVAR: multimodality interventions. Endosvascular Today.

Katz E, Kim D, Ilev I, Krauthamer V. Effects of optical irradiation parameters on safe peripheral nerve stimulation with infrared light. Proceedings of SPIE, vol. 7180, pp. 71800P-71800P-8, 2009.

Kelloff G, Choyke P, Coffey DS. The Prostate Cancer Imaging Working Group (includes Petrick N). Challenges in clinical prostate cancer management: Role of imaging. American Journal of Roentgenology, 192(6):1455-1470, 2009.

Kim C-S, Saylor DM, McDermott MK, Patwardhan DV, Warren JA. Modeling solvent evaporation during the manufacture of controlled drug release coatings and the impact on release kinetics. Journal of Biomedical Materials Research Part B, 90B[2]:688-99, 2009.

Kim D, Kang J, Ilev I. Advanced confocal fiber-optic imaging and sensing approaches. Proceedings of SPIE, vol. 7173, pp. 71730B-71730B-7 (2009).

Kornhauser A, Wei RR, Yamaguchi Y, Coelho SG, Kaidbey K, Barton C, Takahashi K, Beer JZ, Miller SA, Hearing VJ. The effects of topically applied glycolic acid and salicylic acid on ultraviolet radiation-induced erythema, DNA damage and sunburn cell formation in human skin. J. Dermatol. Sci. 55:10-17, 2009.

Li J, Huang A. Yao J, Liu J, Van Uitert RL, Petrick N, Summers RM. Optimizing computer-aided colonic polyp detection for CT colonography by evolving the Pareto Front,” Medical Physics, 36(1):201-212, 2009.

Li H, Smith ML, Chiesa OA, Kijak PJ. Determination of sulfadimethoxine and 4N-acetylsulfadimethoxine in bovine plasma, urine, oral fluid, and kidney and liver biopsy samples obtained surgically from standing animals by LC/MS/MS. J Chromatogr B Analyt Technol Biomed Life Sci. 877(3):237-46, January 15, 2009.

Liu H, I Kyprianou IS, Badano A, Myers KJ, Jennings RJPark S, Kaczmarek RV, Chakrabarti K. SKE/BKE Task-based  methodology for calculating Hotelling observer SNR in mammography. Proceedings of the SPIE  7258, 72581D-1, 2009.

Lucas AD, Lappalainen SK, Wray-Cahn D.  Hyperthermia can increase the cytotoxicity of exogenous compounds. Biomedical Instrumentation and Technology 43:73-7, 2009.

Lucas AD, Chobin N, Connor R, Gordon EA, Mitchell S, Perry B, Stratmeyer ME. The cytotoxic potential of count sheets and labels. JORN 89(3):521-531, 2009.

Lucas AD, Gordon EA, Stratmeyer ME. Analysis of polyhexamethylene biguanide in multi-purpose contact lens solutions. Talanta 80:1016-1019, 2009.

Lyle DB, Breger JC, Baeva L, Shallcross JC, Durfor CN, Wang NS, Langone JJ. Low molecular weight hyaluronic acid effects on murine macrophage nitric oxide production. J Biomed Mater Res A., 2009

Masmoudi H, Hewitt SM, Petrick N, Myers KJ, Gavrielides MA. Automated quantitative assessment of HER-2/neu immunohistochemical expression in breast cancer,” IEEE Transactions on Medical Imaging, 28(6):916-925, 2009.

McCright B, Dang JM, Hursh DA, Kaplan DS, Ballica R, Benton KA, Plant AL. Synopsis of the FDA-NIST Co-Sponsored ‘In Vitro Analysis of Cell/Scaffold Products’ Workshop.  Tissue Engineering Part A, 15(3):455-460, 2009.

McDermott MK, Saylor DM, Casas R, Dair BJ, Guo J, Kim C-S, Mahoney CM, Ng K, Pollack SK, Patwardhan DV, Sweigart DA, Thomas T, Toy J, Williams CM, Witkowski CN. Microstructure and elution of tetracycline from block copolymer coatings. J. Pharm. Sci.,99 (2010), 2777-85. (accepted in 2009)

McNitt-Gray MF, Bidaut LM, Armato III SG, Meyer CR, Gavrielides MA, Fenimore CP, McLennan,G, Petrick N, Zhao B, Reeves AP, Beichel R, Kim H-J (Grace), Kinnard L. CT assessment of response to therapy: Tumor volume change measurement, truth data and error. Translational Oncology, 2(4):216-222, 2009.

Mei NN, Chen T, Godar DE, Moore MM. UVA-induced photomutagenicity of retinyl palmitate. Mutat Research 677(1-2):105-6; author reply 107-8. (Epub 2009 May 27. No abstract available.) PMID: 19477293 [PubMed - indexed for MEDLINE] June-July 2009. Related articles

Meyer CR, SG Armato III, C Fenimore, G McLennan, L Bidaut, D Barboriak,  Gavrielides MA, McNitt-Gray MF, Jackson E, Kinahan P, Petrick N, Zhao B, Croft B, Clarke LP. Quantitative imaging to assess tumor response to therapy: common themes of measurement, truth data & error sources. Translational Oncology, 2(4):198-210, 2009. 

Miller SA, Beer JZ, Savalia V. Commentary on indoor tanning injuries: An evaluation of FDA adverse event reporting data. Photodermatology, Photoimmunology, Photomedicine 25:223-224, 2009.

Moreira TH, Cruz JS, Weinreirch D. Angiotensin II increases excitability and inhibits I in vagal primary sensory neurons. Neuropeptide.

Myer MR, Soneson JE. Temperature modes for nonlinear Gaussian beams.  Journal of the Acoustical Society of America  126(1):425-433, July 2009.

Pantalos G, Wu ZJ, Giridharan G, Rinaldi J, Stewart S, Hariharan P, Lu Q, Berman M, Lukic B, Deutsch S, Leonard E, Manning K, Antaki J, Paden D, Malinauskas R, Smith W, Mockros L, Johnson G. Position Paper: Use of computer and in vitro modeling techniques  ASAIO Journal,  55(1):3-5, 2009.

Paquerault S, Samuelson FW, Petrick N, Myers, KJ, Smith RC. Investigation of reading mode and relative sensitivity as factors that influence reader performance when using computer-aided detection software. Academic Radiology, 16(09):1095-1107, 2009.

Patri AK, Umbreit TH, Zheng J, Nagashima K, Goering PL, Francke-Carroll S, Weaver JL, Miller TJ, Sadreih N, McNeil SE, Stratmeyer ME. Energy dispersive X-ray analysis of titanium dioxide nanoparticle distribution after intravenous and subcutaneous injection in mice. Journal of Applied Toxicology 29:662-672, 2009.

Park S, Witten JM, Myers KJ. Singular vectors of a linear imaging system as efficient channels for the Bayesian ideal observer. IEEE Transactions on Medical Imaging, 28 (5), p. 657-668, 2009.

Park S, Badano AG, Jennings RJ, Kyprianou I, Liu HEMyers KJ. A task-based evaluation method for x-ray breast imaging systems using variable-background phantoms. Proceedings of the SPIE 7258, 72581L-1, 2009.

Park S, Clarkson E. Efficient estimation of ideal-observer performance in classification tasks involving high-dimensional complex backgrounds.  Journal of the Optical Society of America A, 26: B59-B71, 2009. 

Park S, Badano A, Gallas BD, Myers KJ. Incorporating human contrast sensitivity in model observers for detection tasks. IEEE Transactions on Medical Imaging, 28(3):339–347, March 2009.

Pfefer J, Miller S, Mehrabi A, Chang I, Weininger S, Kaufman D. Optical-Thermal Characterization of Cutaneous Transilluminators. Physics in Medicine and Biology 54:6867-6880, 2009.

Regnier FE, et al. Protein-based multiplex assays: Mock pre-submissions to the U.S. Food and Drug Administration, Clinical Chemistry 56:2 (2010) (David Brown) (Appeared in 2009).

Saha A, Kelley EF, Badano A. Accurate color measurement methods for medical displays. Medical Physics, 37(1):74–81, 2010. (Appeared in 2009)

Sapsford K, JFrancis J, Sun S, Kostov Y, Rasooly A. Miniaturized 96-well ELISA chips for staphylococcal enterotoxin B detection using portable colorimetric detector.  Anal Bioanal Chem  80:8532–8537, 2009.

Sapsford K, Sun S, Francis J Kostov Y, Rasooly A, Farrell D, Mattoussi H, Medintz I. Energy transfer-based biosensing of protease activity measured using an electroluminescent platform.  In: Fauchet P (Eds.): Frontiers in Pathogen Detection: From Nanosensors to Systems. Proceedings of SPIE 2009. ISSN 1605-7422. 10(7):1-13.

Sapsford K, Farrell D, Sun S, Rasooly A, Mattoussi H, Medintz I. Monitoring of enzymatic proteolysis on an electroluminescent-CCD microchip platform using quantum dot-peptide substrates.  Sensors & Actuators: B. Chemical 139:13-21, 2009.

Saylor DM, Kim C-S, Patwardhan DV, Warren JA. Modeling microstructure development and release kinetics in controlled drug release coatings. J. Pharm. Sci., 98:169-186, 2009.

Seidman S. In vitro testing reveals sample RFID readers inducing clincially significant emi to pacemakers and ICDs. Published online Heart Rhythm Journal, October 12, 2009.

Shellock FG, Woods TO, Cures JV 3rd.  MR labeling information for implants and devices: explanation of terminology. Radiology 253(1):26-30 (2009).

Summers RM, Frentz SM, Yao J, Liu J, Brown L, Louie A, Barlow DS, Jensen DW, Pickhardt PJ, Petrick N. Conspicuity of colorectal polyps at CT Colonography: Visual assessment, CAD performance, and the important role of polyp height. Academic Radiology, 16(1):4-14, 2009.

Sun S, Ossandon M, Kostov Y, Rasooly A. Lab-on-a-chip for botulinum neurotoxin a (BoNT-A) activity analysis. Lab on a chip 21:3275-81, 2009.

Sun S, Sergeev N, Francis J, Kostov Y, Yang M, Bruck H, Herold KE, Rasooly A. Laminated object manufacturing (LOM) technology-based, multi-channel Lab-on-a-chip for enzymatic and chemical analysis. Lab-on-a-Chip Technology: Fabrication and Microfluidics. 1:161-173, 2009.

Wear KA. Frequency dependence of average phase shift from human calcaneus in vitro. Journal of the Acoustical Society of America 126(6):3291-3300, December 2009.

Wear KA. The dependencies of phase velocity and dispersion on volume fraction in cancellous-bone-mimicking phantoms. Journal of the Acoustical Society of America 125(2):1197-1201, February 2009.  Also accessible in Virtual J. Biol. Phys. Res. 17(4), February, 2009.

Wu C, Retta S, Robinson R, Herman B, Grossman L. A novel study of mechanical heart valve cavitation in a pressurized pulsatile duplicator. ASAIO Journal, 55:445-451, 2009.

Yang MK, Kostov Y, Bruck H, Rasooly A. Gold nanoparticle-based enhanced chemiluminescence immunosensor for detection of Staphylococcal Enterotoxin B (SEB) in food. International Journal of Food Microbiology 133:265–271, 2009.

Yang M, Sapsford K, Sergeev N, Sun S, Rasooly A. Meeting current public health needs: Optical biosensors for pathogen detection and analysis. In: Fauchet P (Eds.): Frontiers in Pathogen Detection: From Nanosensors to Systems. Proceedings of SPIE 2009. ISSN 1605-7422. 10(7):1-13, 2009.

Zhang J, Goering PL, Espandiari P, Shaw M, Bonventre JV, Vaidya VS, Brown RP, Keenan J, Kilty CG, Sadrieh N, Hanig JP.  Differences in immunolocalization of Kim-1, RPA-1, and RPA-2 in kidney between gentamicin- and cisplatin-treated rats: Role of iNOS and nitrotyrosine. Toxicol. Pathology 37:629-643, 2009.

Zhang K, Katz E, Kim D, Kang J, Ilev I. A fiber-optic nerve stimulation probe integrated with a precise common-path optical coherence tomography distance sensor. International Conference on Lasers and Electro-Optics (CLEO-2010), San Jose, CA, May 16­21, 2010.

Zhang K, Akpek E, Weiblinger R, Kim D, Kang J, Ilev I. Post-surgical volumetric evaluation of clear corneal incision quality using a high-resolution 3-D spectral-domain optical coherence tomography. International Conference on Lasers and Electro-Optics (CLEO-2010), May 16­21, 2010, San Jose, CA.


Book Chapters

Chen J., Kainz W, Wu D. Applications to nonionizing radiation protection. In Handbook of Anatomical Models for Radiation Dosimetry,  Xie George Xu and Keith F. Eckerman, editors, CRC Press, Taylor & Francis Group, 2009.

Chang I, Pfefer TJ. Chapter 26: Modeling of image-guided therapy. Book Chapter In Image-Guided Therapy Systems, S. Vaezy and V. Zderic, Eds., Artech House, Boston, MA, 2009.

Gover T, Moreira TH, Weinreich D. Role of calcium in regulating primary sensory neuron excitability. In Pharmacology of Sensory Nerve (Handbook of Experimental Pharmacology), Spina, D. And  Canning, B., eds., New York: Springer, 2009.

Harris GR. Chapter 19. Piezoelectric polyvinylidene fluoride (PVDF) in biomedical ultrasound exposimetry. In Biomedical Applications of Electroactive Polymer Actuators, eds. F. Carpi and E. Smela, (John Wiley & Sons, Chichester, UK) pp. 369-383, 2009.

Patwardhan DV. 2nd Edition Book Chapter on Nylon 4,6; Oxford University Press, 2009.

Prince JL, Pham DL, Myers KJ (eds.). Information processing in medical imaging. Proceedings of the 21st International Conference, Springer Lecture Notes in Computer Science: Image Processing, Computer Vision, Pattern Recognition, and Graphics, Vol. 5636, 2009.



Chen J, Kainz W. Non-Ionizing Radiation Applications. Handbook of Anatomical Models for Radiation Dosimetry, Editors Xu and Eckerman, Taylor & Francis Group.  

Dair BJ, Tyner K, Sapsford KE. Techniques for the characterization of nanoparticle-bioconjugates. In: Nanoparticles in Bioengineering. Editors: Raushal Rege and Igor Medintz. Publisher: Artech House, 2009.

Herold KE, Rasooly A, editors. Lab-on-a-Chip Technology: Fabrication and Microfluidics: Preface and Introduction (Introduction to Microfluidics), vol. 1, XI Horizon Scientific Press, 2009.

Herold KE, Rasooly A, editors. Lab-on-a-Chip Technology: Biomolecular Separation and Analysis. Horizon Scientific Press, 2009.


Conference Proceedings 

Agrawal A, Gavrielides M, Weininger S, Chakrabarti K, Pfefer J.  Regulatory perspectives and research activities at the FDA on the use of phantoms with in vivo diagnostic devices. In Proceedings of  SPIE 6870 Design and Performance Validation of Phantoms Used in Conjunction with Optical Measurements of Tissue, Robert J. Nordstrom, ed., 687005. 

Angelone LM, Bit-Babik G, Chou CK. Computational electromagnetic analysis in a human head model with EEG electrodes and leads exposed to RF sources at 915 MHz and 1748 MHz. Presented at FGF Workshop 2009, Stuttgart, Germany, November 23-23, 2009.

Badano A, et al. Effect of case variability on the measurement of reader performance. Proceedings of the International Display Research Conference, 2009.

Badano A et al, Quantization in medical imaging displays – initial observer results for a high-luminance-range, dual-layer LCD. Proceedings of SID, 2009.

Benkler S, Kainz W, Guag J, Krauthamer V, Myklebust J, Chang I, Chavannes N, Kim JH, Sarntinoranont M, Kuster N.  Development of a magneto-hydrodynamic solver for anatomical models. APS/URSI, Charleston, SC June 1-5, 2009.

Benkler S, Kainz W, Guag J, Krauthamer V, Myklebust J, Chang I, Chavannes N, Kim JH, Sarntinoranont M, Kuster N.  Magneto-hydrodynamic simulations for non-invasive cardiac blood flow measurement. BioEM, Davos, Switzerland, June 14-19, 2009.

Brown DG. Bob’s first decade: At the beginning. SPIE Medical Imaging
Symposium, Orlando, FL, February 7-12, 2009.

Chen W, Gallas BD. Classifier variability: Accounting for training and testing. Joint Statistical Meeting proceedings, 2009.

Chen W, Wagner RF, Yousef W, Gallas B. Comparison of classifier performance estimators: a simulation study. SPIE Medical Imaging Conference proceedings, 2009.

Cobb J, Lee A, Tran-Son-Tay R, Sarntinoranont M, Luu HMD. Evaluation of hyaluronic acid-based ocular viscosurgical devices (OVDs) using an in vitro human corneal epithelial cell line model. The American Chemical Society Proceedings Annual Meeting, Washington, DC, August 15-21, 2009.

Dasgupta S, Wansapura J, Hariharan P, Pratt R, Witte D, Myers MR, Banerjee RK. Determination of lesion size as function of HIFU sonication time using MRI monitoring. Proceedings of ASME Summer Bioengineering Conference, SBC2009- 205163; 2009.

Gallas B, Lorenzo Pesce. Comparison of ROC methods for partially paired data. SPIE Medical Imaging Conference proceedings, 2009.

Gavrielides MA, Zeng R, Kinnard LM, Myers KJ, Petrick N. A template-based approach for the analysis of lung nodules in a volumetric CT phantom study. Proceedings of SPIE Medical Imaging, 7260:726009-1-726009-11, 2009.

He X, Gallas B, Frey E. Three-class ROC Analysis: The general decision theoretic solution. IEEE Medical Imaging Conference proceedings, 2009.

Ilev I. Advanced confocal microscopy in biophotonics and nanobiophotonics. Asia Communications and Photonics Conference and Exhibition (ACP’2009), Shanghai, China, November 2-6, 2009.

Ilev I. From biophotonics toward nanobiophotonics: Breaking the diffraction barrier in the subwavelength nanoscale. IEEE/NIH 2009 Life Science Systems and Applications Workshop (LiSSA 2009), Paper 51, National Institutes of Health, Bethesda, MD, April 9-10, 2009.

Kyprianou IS, Gallas BD, Badano A, Park S, Liu H, Myers KJ. Noise and signal detection in digital X-ray detectors using the spatial definition of SNR.  SPIE 2009 Medical Imaging 7258-44.

Liu H, Kyprianou IS, Badano A, Myers KJ, Jennings RJ, Park S, Kaczmarek RV, Chakrabarti K. SKE/BKE Task based ideal observer SNR methodology for Mammography. SPIE Medical Imaging 2009: Physics of Medical Imaging, 7258-44, 2009.

Liu Y, Maruvada S, King RL, Herman BA, Wear KA. Temperature-dependent physical properties of a HIFU blood mimicking fluid. Proceedings: 8th International Symposium on Therapeutic Ultrasound - AIP Conf. Proc. 1113: 291-295, 2009.

Maruvada S, Liu Y, Herman BA, Harris GR. Temperature measurements in tissue-mimicking material during HIFU exposure.  Proceedings: 8th International Symposium on Therapeutic Ultrasound, AIP Conf. Proc. 1113:286-290, 2009.

McDermott MK, Kim C-S, Saylor DM, Patwardhan DV, Pollack SK. Effect of drug loading and polymer chemistry on the structure formation of drug-polymer coatings: Experiments and simulations.  Transactions of the 33rd annual Meeting of the Society For Biomaterials, San Antonio, TX, April 22, 2009.

McDermott MK.  Effect of drug loading and polymer chemistry on the structure formation of drug-polymer coatings: Experiments and simulations. Transactions of the 33rd annual Meeting of The Society For Biomaterials, San Antonio, TX, April 24, 2009. 

McDermott MK, Kim C-S, Butziger L, Patel L, Saylor DM, Patwardhan DV, Pollack SK. Effect of drug loading and polymer chemistry on the structure formation of drug-polymer coatings:  Experiments and simulations. Polymeric Materials: Science & Engineering v101, p1544, 238th ACS National Meeting & Exposition, Washington, DC, August 16-20, 2009.

Paquerault S, Samuelson FW, Myers KJ, Smith RC. Non-localization and localization ROC analyses using clinically-based scoring. Proceedings of the SPIE 7263-29, 2009.

Park S, Liu H, Jennings R, Leimbach R, Kyprianou I, Badano A, Myers K. A task-based evaluation method for x-ray breast imaging systems using variable-background phantoms. Proceedings of SPIE 7258, 72581L, 2009. 

Soneson JE. A user-friendly software package for HIFU Simulation. Proceedings: 8th International Symposium on Therapeutic Ultrasound, AIP conference proceedings. 1113:165-169, 2009.

Wang S, Yao J, Summers RM, Petrick N. Combining heterogeneous features for colonic polyp detection in CTC based on semi-definite programming.  Proceedings of SPIE Medical Imaging, 7260:7260R-1-7260R-8, 2009.

Wang S, Yao J, Liu J, Petrick N, Summers RM. Centerline registration of prone and supine CT colonography scans based on correlation optimized warping and anatomical landmarks. IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2009. ISBI '09; 955-958, 2009. 

Wang S, Yao J, Liu J, Petrick N, Summers RM. Registration of prone and supine CT colonography scans based on correlation optimized warping and canonical correlation analysis. Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2009. pp. 81-84, 2009.

Witten JM, Park S, Thompson L, Myers KJ. Using partial least squares to compute efficient channels for the Bayesian ideal observer. SPIE 2009 Medical Imaging, 2009. 

Young S, Park S, Anderson SK, Badano A, Myers KJ, Bakic P. Estimating breast tomosynthesis performance in detection tasks with variable-background phantoms.  Proceedings of SPIE 7258, 72580O, 2009. 


Abstracts, Book Reviews, etc.

Abi-Jaoudeh N, Dake M, Pritchard WF, Dreher M, Karanian J, Chiesa O, Esparza J, Sharma K, Tang T, Glossop N, Wood BJ. Electromagnetic tracking navigation for thoracic aortic stent graft deployment. 2009 SIR Annual Meeting.

Austin CA, Umbreit TH, Brown KM, Barber DS, Dair BJ, Francke-Carroll S, Feswick A, Saint-Louis MA, Goering PL. Assessment of the distribution of intravenousdly-injected silver nanoparticles in pregant mice and developing embryos. Toxicologist 103(1):113, abstract 235, 2009.

Austin CA, Umbreit TH, Brown KM, Barber DS, Dair BJ, Francke-Carroll S, Saint-Louis M, Feswick A, Goering PL. Distribution of intravenously-injected silver nanoparticles in pregnant mice and translocation to developing embryos.  The Toxicologist 108(1): 48, 2009 - Society of Toxicology, 48th Annual Meeting, Baltimore, MD, March 15-19, 2009.

Brown RP, Goering PL, Zhang J. Use of renal biomarkers to characterize toxicity-based pathways of nephrotoxicity. Proceedings of the Symposium on Toxicity Pathway-Based Risk Assessment: Preparing for Paradigm Change - National Academy of Sciences, Washington, DC, May 11-13, 2009. 

Chiesa OA, Wood BJ, N Abi-Jaoudeh N, Dreher M, Sharma K, Glossop N, Pritchard WF, Karanian JW. The multimodality interventional suite: imaging tools in preclinical studies.     Proceedings, 6th Annual Meeting Veterinary Endoscopy Society. March 25-27, 2009. Cancun, Mexico. : 33-34.

Choi J, Reipa V, Hitchins VM, Goering PL, Malinauskas R. In-vitro hemolysis testing of silver nanoparticles in human blood. The Toxicologist 108(1):331, 2009 - Society of Toxicology, 48th Annual Meeting, Baltimore, MD, March 15-19, 2009.

Clavet CF, Chaput MP, Gonzalez J, To TM, Saviola JF, Smith MK, Warburton KF, Lucas AD, Hitchins VM. Evaluating the effects of contact lenses, lens cases, and "soil" on disinfection efficacy of contact lens care products. Microbiological Testing for Contact Lens Care Products, Silver Spring, MD,  January 22-23, 2009.

Clavet CF, Chaput MP, Gonzalez J, To TM, Saviola JF, Smith MK, Warburton KF, Lucas AD, Hitchins VM. The effects of contact lens and lens cases on disinfection activity in multipurpose contact lens solution against S. aureus. 109th General Meeting of American Society for Microbiology, Philadelphia, PA, May 17-21, 2009.

Dreher M, Sharma K, Orandi B, Donohue D, Tang Y, Lewis A, Karanian J, Chiesa A, Pritchard W, Wood B.  Distribution of beads and doxorubicin following transcatheter arterial chemoembolization.  2009 SIR Annual Meeting.

Gray RA. The complex effect of intracellular calcium signaling on action potential duration restitution: A simulation study. Heart Rhythm Journal 6(5):S232, 2009.

Gray RA, Mashburn DN, Sidorov VY, Wikswo JP. Transmembrane current imaging during pacing and fibrillation. Heart Rhythm Journal 6(5):S298, 2009.

Gray RA, Mashburn DN, Sidorov VY, Wikswo JP. Quantification of transmembrane currents during stable action potential propagation. Heart Rhythm Journal 6(5):S234, 2009.

Karanian J, Chiesa OA, Pritchard W. Predictors of implant performance: Interface between imaging and computational tools in the multimodality interventional.  FDA/ NHLBI/ NSF Cardiovascular Device Computational Modeling workshop, Rockville, MD,  June 1-2, 2009.

Karanian JW, Peregoy J, Chiesa A, Ahn C, Pritchard WF. Efficiency of drug delivery to the coronary arteries is dependent on the route of administration in swine: Assessment of luminal, intimal and adventitial intra-coronary and venous delivery modes with non-radioactive isotopic labels.  Cardiovasc Revasc Med 2009;10(4):261-2.

Katz E, Kim DH, Krauthamer V, Ilev I. Effects of optical irradiation parameters on safe peripheral nerve stimulation with infrared light. SPIE Proceeding, vol 7180, pp. 7180P – 8 (2009).

Kim D, Kang JU, Ilev I. Advanced confocal fiber-optic imaging and sensing approaches. SPIE Proceeding, vol 7173, pp 7173B – 7 (2009). 

Krauthamer V, Gray RA. Transmembrane Impedance and Intracellular Calcium changes following High-Voltage Shocks in Cardiomyocytes. Heart Rhythm Journal 6(5):S356, 2009.

Levy E, Wood B, Karanian J, Pritchard W, Chiesa O. Steerable endobronchial navigation without a bronchoscope or fiberoptic visualization. RSNA 2009.

Loftin S, Toal M, Pollard C, Bailey M, Lucas A, Stratmeyer M, Brown R. Cytotoxicity of latex condom extracts in L929 fibroblasts and RAW 264.7 macrophages. Society of Toxicology Annual Meeting, Baltimore, MD, March 15-19, 2009.

McBryde KD, Brown RP, Goering PL. Development of urinary biomarkers of kidney damage in patients with systemic lupus erythmatosus nephritis. FDA Office of Women’s Health – Science Day.  Sept 25, 2009.

Pritchard WF, Constante E, Chiesa A, Peregoy J, Esparza J, Karanian JW. Evaluation of vascular motion of peripheral arteries in swine: Toward predictive modeling of clinical failure modes. CRT 2009, Washington, DC, 2009. 

Reddy G, Sharma K, Dreher M, Woods D, Donohue D, Karanian J, Chiesa A, Pritchard W, Tang Y, Foster R, Willis S, Lewis A, Wood B. Tissue penetration of drug from doxorubicin eluting radiopaque embolization beads.  SIR 2009.

Sharma K, Dreher MR, Peregoy J, Orandi B, Tang Y, Lewis A, Willis S, Woods D, Jones G, Karanian J, Chiesa A, Pritchard W, Wood B. Distribution of image-able beads during transcatheter arterial embolization. Cardiovascular and Interventional Radiological Society of Europe, Lisbon, Portugal, September 19-23, 2009.

Sharma K, Dreher M, Peregoy J, Orandi B, Tang Y, Lewis A, Karanian J, Chiesa A, Pritchard W, Wood B. Development and evaluation of image-able beads to investigate transcatheter embolization technique. 2009 SIR Annual Meeting.

Stohlman J, Gray RA, Aguel  F. Localized entrainment of myocardium by 60-hz alternating current as a mechanism for inducing ventricular tachyarrythmias. Biomedical Engineering Society Conference, Pittsburgh, PA. Biomedical Engineering Society: Landover, MD, 2009; Poster PS8B-177.

Tata DB, Waynant RW. A comparative study on confluent and non-confluent human malignant brain cancer metabolic response to He-Ne  laser exposures: evidence for laser enhanced cellular production of H2O2 and Laser induced “Bystander” effect.” [7165-07].  SPIE- BIOS in Conference 7165–Mechanisms for Low –Light Therapy IV, January 24, 2009.

Wang Q, Agrawal A, Wang NS, Pfefer J. Condensed Monte Carlo modeling of reflectance spectroscopy with a single illumination-detection fiber. Conference on Lasers and Electro-Optics,  (the Optical Society of America), Baltimore, MD, 2009.

Wang Q, Agrawal A, Wang NS, Pfefer J. Evaluation of a reflectance-based approach for optical property determination in layered tissue. Proceedings of SPIE 7170, 71700I (2009).

Wang Q, Pfefer J. Optical property measurement of internal tissues with a fiberoptic-based UVA-VIS reflectance system. American Society for Photobiology Topical Symposium, 2009.

Wang Q, Shastri K, Agrawal A, Pfefer J. Numerical and experimental evaluation of an unconstrained approach for UVA-VIS optical property measurement in two-layer mucosal tissue. NIH/SPIE Biophotonics Workshop, 2009.

Xie H, Fernandez AT, Bae U, Xu S, Kruecker J, Karanian J, Chiesa A, Pritchard WF, Wood BJ.  Real-time ultrasound elasticity imaging for liver rf ablation assessment:  Preliminary ex vivo and in vivo animal studies. IEEE Proceedings: 2009 IEEE Ultrasonics Symposium, 2009.

Zhang J, Ohm J, Vaidya VS, Espandiari P, Knapton A, Goering PL, Brown RP, Bonventre JV, Herman EH. NGAL expression in kidney of spontaneous hypertensive rats treated with doxorubicin alone or with dexrazoxane: A comparison with Kim-1 expression. The Toxicologist 108(1):48, 2009 - Society of Toxicology, 48th Annual Meeting, Baltimore, MD, March 15-19, 2009.

Zhang Q, Goering PL, Hitchins VM. Gold nanoparticles exhibit no cytotoxic or inflammatory responses in RAW 264.7 murine macrophage cells. Gordon Research Conference, July 2009.



Letters to the Editor

Stewart SFC, Walsh DL, Schroeder RJ.  Not all mesalamine enema bottles are created equal. Letter to the Editor. American Journal of Gastroenteroogy, 104:1068 (2009).