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Recently Accepted Scientific Publications: NCTR

Publication is an essential component of research. All documents authored by NCTR investigators must undergo the NCTR Document Review and Approval Process, which consists of the review, clearance, and approval by the Center Director prior to submitting the publication to a journal. The list below identifies the NCTR-approved publications that were accepted or published in journals or books in FY13.

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Accepted October 2012 — September 2013

  • Akiyama, T., Presedo, J. and Khan, A.A. (2013). The tetA gene decreases tigecycline sensitivity of Salmonella enterica isolates. Journal of Anitmicrobial Chemotherapy, 42:133-140.   
  • Antunes, A.M., Antunes, A.M., Wolf, B., Oliveira, M., Beland, F.A. and Marques, M.M. (2013). 2'-Deoxythymidine adducts from the anti-HIV drug nevirapine. European Journal of Organic Chemistry, 18(5):4955-4971.  
  • Bairi, V.G., Bourdo, S., Schnackenberg, L., Berry, B.C., Biris, A.S. and Viswanathan, T. (2013). Separation and spectroscopic/molecular weight analysis of crude and purified polyaniline(s). Journal of Polymer Research, 20(193):DOI 10.1007/.  
  • Banda, M., Recio, L. and Parsons, B.L. (2013).  ACB-PCR measurement of spontaneous and furan-induced H-ras codon 61 CAA to CTA and CAA to AAA mutation in B6C3F1 mouse liver. Environmental and Molecular Mutagenesis, 54:8:659-667.  
  • Beger, R. (2013). A review of applications of metabolomics in cancer. Metabolites, 3:552-574.  
  • Bhalli, J.A., Ding, W., Shaddock, J.G., Pearce, M.G., Dobrovolsky, V.N. and Heflich, R.H. (2013). Evaluating the weak in vivo micronucleus response of a genotoxic carcinogen, Aristolochic acids. Mutation Research-Genetic Toxicology and Environmental Mutagenesis, 753 (2):82-92.  
  • Binienda, Z.K., Sarkar, S., Mohammed Saeed, L.A., Gough, B.J., Beaudoin, M.A., Ali, S.F., Paule, M.G. and Imam, S.Z. (2013). Chronic exposure to rotenone, a dopaminergic toxin, results in peripheral neuropathy: Association with dompaminergic damage. Neuroscience Letters, 541:233-237.  
  • Bisgin, H., Chen, M., Wang, Y., Kelly, R., Fang, H., Xu, X. and Tong, W. (2013). A systems approach for analysis of high content screening assay data with topic modeling. BMC Bioinformatics,(Suppl:S11).   
  • Bowyer, J.F., Patterson, T.A., Saini, U.T., Hanig, J.P., Thomas, M., Camacho, L.M., George, N. and Chen, J.J. (2013). Comparison of the global gene expression of choroid plexus and meninges and associated vasculature under control conditions and after pronounced hypertermia or amphetamine toxicity. BMC Genomics, 14:147.  
  • Buzatu, D.A., Cooper, W.M., Summage-West, C.V., Sutherland, J.B., Williams, A.J., Bass, D., Smith, L., Woodruff, R., Christman, J., Reid, S., Tucker, R.K., Haney, C.J., Ahmed, A., Rafii, F. and Wilkes, J.G. (2013). Photobleaching with phloxine B sensitizer to reduce food matrix interference for detection of Escherichia coli serotype O157:H7 in fresh spinach by flow cytometry. Food Microbiology, 36:416-425.   
  • Chen, H., Chen, D. and Chen, J.J. (2013). Assessment of transferability of cancer survival risk predictions across different centers. BMC Medical Research Methodology, 13:25:Online: 10.1.  
  • Chen, H., Zou, W., Tien, Y. and Chen, J.J. (2013). Identification of bicluster regions in a binary matrix and its application. PloS One, 8(8):e71680. doi.  
  • Chen, J.J., Lin, W. and Chen, H. (2013). Pharmacogenomic biomarkers for personalized medicine. Pharmacogenomics, 14(8):969-80.  
  • Chen, J.J., Lin, W. and Lu, T.(2013). Biomarkers of susceptibility. Biomarkers in Toxicology, 22(1):845-50.  
  • Chen, M., Borlak, J.T. and Tong, W. (2013). High lipophilicity and high daily dose of oral medications are associated with significant risk for drug-induced liver injury. Hepatology, 58(1): 388-96.  
  • Chen, M., Hong, H. and Tong, W. (2012). Genomic biomarkers for personalized medicine in breast cancer. International Journal of Clinical Pharmacology & Toxicology (IJCPT), 1:302.  
  • Chen, M., Hong, H., Fang, H., Kelly, R., Zhou, G., Borlak, J.T. and Tong, W. (2013). Quantitative structure-activity relationship models for predicting drug-induced liver injury based on FDA-approved drug labeling annotation. Toxicological Science, 136(1):242-9.  
  • Chen, M., Zhang, J., Wang, Y., Liu, Z., Kelly, R., Zhou, G., Fang, H., Borlak, J.T. and Tong, W. (2013). The liver toxicity knowledge base: a systems approach to a complex end point. Clinical Pharmacology and Toxicology, 93 (5):409-412.  
  • Chen, S., Xuan, J. and Guo, L. (2013). MicroRNA in drug-induced liver toxicity, "microRNAs in Toxicology and Medicine". Wiley Publishers, In Press.  
  • Chen, X., Zhang, Y., Yan, J., Sadiq, R. and Chen, T. (2013). miR-34a suppresses mutagenesis by inducing apoptosis in human lymphoblastoid TK6 Cells. Mutation Research, 415-467.   
  • Cuevas- Martinez, E.Y., Trickler, W.J., Guo, X., Ali, S.F., Paule, M.G. and Kanungo, J. (2013). Acetyl l-carnitine protects motor neurons and Rohon-Beard sensory neurons against ketamine-induced neurotoxicity in zebrafish embryos. Neurotoxicology Teratology, 39:69-76.  
  • De Conti, A., Tryndyak, V.P., Koturbash, I., Heidor, R., Moreno, F., Kuroiwa-Trzmielina, J., Ong, T., Beland, F.A., Moreno, F. and Pogribny, I.P. (2013). The chemopreventive activity of the butyric acid prodrug tributyrin in experimental rat hepatocarcinogenesis is asscoated with p53 acetylayion and activation of the p53 apoptotic signaling pathway. Carcinogensis Journal, 34(8):1900-6.  
  • Dobrovolsky, V.N., Bhalli, J.A., Shaddock, J.G. and Pearce, M.G. (2013). Sensitivity of the Pig-a assay for detecting gene mutation in rats esposed acutely to strong clastogens. Mutagenesis, 28 (4):447-55.  
  • Dobrovolsky, V.N., Shaddock, J.G., Mittelstaedt, R.A. and Heflich, R.H. (2013). Detection of in vivo mutation in the Hprt and Pig-a genes of rat lymphocytes. Molecular Toxicology Protocols, 1044:978-1007.  
  • Ferguson, S.A., Rosenfeld, C.S. (2014). Barnes maze testing strategies with small and large rodent models. J. Vis. Exp., (84), e51194, doi:10.379.   
  • Foley, S.L., Johnson, T.J., Ricke, S., Nayak, R.R. and Danzeisen, J. (2013). Salmonella pathogenicity and host adaptation in chicken-associated serovars. Microbiology and Molecular Biology Reviews, 77(4):582-607.   
  • Foster, L., Allan, M., Khan, A.A., Moore, P., Williams, K.D., Hubbard, M., Dixon, L. and Gurley, B. (2013). Multiple dosing of Ephedra-free dietary supplements: hemodynamic, electrocardiographic, and bacterial contamination effects. Clinical Pharmacology & Therapeutics, 93(3):267-274.  
  • Fu, P.P. and Xia, Q. Assessment of safety and quality assurance of herbal dietary supplements. Nutraceutical and Functional Food Regulations, 2nd Edition, Debasis Bagchi (Editor), Elsevier/Academic Press.  
  • Fu, P.P., Fu, P.P., Xia, Q., Zhao, Y., Von Tungeln, L.S., Doerge, D.R., Lin, G. and Cai, L. (2013). Pyrrolizidine alkaloid-derived DNA adducts as a common biological biomarker of pyrrolizidine alkaloid-induced tumorigenicity. Chemical Research in Toxicology, 26(9):1384-96.  
  • Fu, P.P., Xia, Q., Zhao, Y., Yu, H. and Chiang, H. (2013). Phototoxicity of herbal plants and herbal products. J. Environ. Sci. Health, Part C., 31(3):213-55.  
  • Ge, Y., Wang, D., Chiu, J., Cristobal, S., Sheehan, D.M., Silvestre, F., Peng, X., Li, H., Gong, Z., Lam, S., Wentao, H., Iwahashi, H., Liu, J., Mei, N., Shi, L., Bruno, M., Foth, H., Teichman, K. and Woychik, R. (2013). Environmental OMICS: Current Status and Future Directions. Journal of Integrated OMICS, 3:75-87.  
  • Gokulan, K., Khare, S. and Cerniglia, C.E. (2013). Metabolic Pathways: Production of secondary metabolites of bacteria. Aims and Scope of the Encyclopedia of Food Microbiology, 2nd Edition, 337-342.  
  • Gokulan, K., Khare, S., Rooney, A., Han, J., Lynne, A.M. and Foley, S.L. (2013). Impact of plasmids, including those encoding VirB4/D4 type IV secretion systems, on Salmonella enterica serovar heidelberg virulence in macrophages and epithelial cells. PlosOne, 8(10):1-13.  
  • Guo, L.,  Li, Y. and Lin, H. (2013). The expression of drug-metabolizing enzymes and  transporters in different hepatic cells and human liver samples. Introduction to Sequence and Genome Analysis, 434-447.
  • Guo, X., Wang, N., Zhu, L., Zhou, R., Jin, W., Wang, C., Chen, Z. and Liu, W. (2013). A functional polymorphism rs11614913 in miR-196a2 is associated with increased risk of colorectal cancer but not with tumor stage and grade. Biomedical Reports, 1:737-742.  
  • Guo, Y., Shi, L., Hong, H., Su, Z., Fuscoe, J. and Ning, B. (2013). Studies on Abacavir-Induced Hypersensitivity Reaction: A Successful Example of Translation of Pharmacogenetics to Personalized Medicine. Science China: Life Sciences, 56(2):199-124.  
  • Han, J., Gokulan, K., Barnette, D.A., Khare, S., Rooney, A., Deck, J., Nayak, R.R., Stefanova, R. and Foley, S.L. (2013). Evaluation of virulence and antimicrobial resistance in Salmonella enterica serovar Enteritidis isolates from humans and chicken- and egg-associated sources. Foodborne Pathogens and Disease, 10(12):1008-1015.
  • Han, J., Lynne, A.M., David, D.E., Tang, H., Xu, J., Nayak, R.R., Kaldhone, P., Logue, C.M. and Foley, S.L. (2012). DNA sequence analysis of plasmids from multidrug resistant Salmonella enterica serotype heidelberg isolates. PLoS One, 7(12):1-8.  
  • Hansen, D.K., George, N., White, G.A., Pellicore, L., Abdel-Rahman, A. and Fabricant, D. Effects of Citrus aurantium in Exercised Rats. Cardiovascular Toxicology.  
  • Hart, M.E., Tsang, L.H., Deck, J., Daily, S.T., Jones, R.C., Liu, H.H., Hu, H., Hart, M.J. and Smeltzer, M.S. (2013). Hyaluronidase expression and biofilm involvement in Staphylococcus aureus UAMS-1 and its sarA, agr, and sarA agr regulatory mutants. Microbiology, 159:782-791.
  • He, Z., Cui, L., He, B., Ferguson, S.A. and Paule, M.G. (2013). A common genetic mechanism underlying susceptibility to posttraumatic stress disorder. World Journal of Neurology, 3(3):14-24.  
  • He, Z., Ferguson, S.A., Cui, L., Greenfield, J.L. and Paule, M.G. (2013). Development of the sexually dimorphic nucleus of the preoptic area and estrogen-like compounds. Neural Regeneration Research, 8 (29):2763-2774.  
  • Hong, H., Jawaid, A., Wang, J., Catalano, J., Fox, J.C. and Hawkins, T.B. (2013). Combining genetic variations in CYP2C9 and VKORC1 with clinical factors for Warfarin dosing determination improved clinical effectiveness. Pharmacogenomics, 14(5):459-463.  
  • Hong, H., Zhang, W., Shen, J., Su, Z., Ning, B., Han, T., Perkins, R.G., Shi, L. and Tong, W. (2013). Critical role of bioinformatics in translating huge amounts of next-generation sequencing data into personalized medicine. Science China: Life Science, 56-2:110-118.  
  • Hong, H., Zhang, W., Su, Z., Shen, J., Ge, W., Ning, B., Fang, H., Perkins, R.G., Shi, L. and Tong, W. (2013). Next-generation sequencing (NGS): a revolutionary technology in pharmacogenomics and personalized medicine. Omics for Personalized Medicine, :39-61.   
  • Imam, S.Z., Trickler, W.J., Binienda, Z.K., Paule, M.G., Slikker, W., Li, S., Clark, R. and Ali, S.F. (2013). Neuroprotective efficacy of new brain-penetrating c-Abl inhibitor in murine Parkinson's disease model. PLoS One, 8(5):1-8.  
  • Inselman, A.L., Wang, C., Liu, F. and Hansen, D.K. (2013). Stem cells in toxicity testing. Handbook of Nanotoxicology, Nanomedicine and Stem Cell Use in Toxicology.  
  • Johnson, A.F., Aungst, J., Bucher, J.R., Camacho, M., Delclos, K.B., Heindel, J.J., Howard, P., Keefe, D., Newbold, R., Zoeller, R. and Schug, T.T. (2013). A new approach to synergize academic and guideline-compliant research: the clarity-BPA research program. Reproductive Toxicological, 40:35-40.  
  • Kanungo, J., Cuevas- Martinez, E.Y., Ali, S.F. and Paule, M.G. (2013). Ketamine induces motor neuron toxicity and alters neurogenic and proneural gene expression in zebrafish. Journal of Applied Toxicology, 33(6):410-417.
  • Kazempour, Z.B., Yazdi, M., Rafii, F. and Shahverdi, A.R. (2013). Sub-inhibitory concentration of biogenic selenium nanoparticles lacked post antifungal effect for Aspergillus niger and Candida albicans and stimulated the growth of Aspergillus niger. Iranian Journal of Microbiology, 5 (1):81-85.  
  • Keelara, S., Scott, H.M., Morrow, W.M., Gebreyes, W.A., Correa, M., Nayak, R.R., Stefanova, R. and Thakur, S. (2013). Longitudinal study reporting distribution of phenotypic and genotypic similar antimicrobial resistant Salmonella serovars between pigs and their environment in two distinct swine production systems. Applied and Environmental Microbiology, 79(17):5167-5178.  
  • Khare, S., Williams, K.M. and Gokulan, K. Nanotechnology. Encyclopaedia of Food Microbiology, 2nd Edition.  
  • Kim, D., Feng, J., Chen, H., Kweon, O., Gao, Y., Yu, L., Burrowes, V.l. and Sutherland, J.B. (2012). Identification of the enzyme responsible for N-acetylation of norfloxacin by Microbacterium sp. strain 4N2-2. Applied and Environmental Microbiology, 79(1):314-321.  
  • Kwekel, J.C., Desai, V.G., Moland, C.L., Vijay, V. and Fuscoe, J. (2013). Sex differences in kidney gene expression during the life cycle of F344 rats. Biology of Sex Differences, 4:14:doi:10.1186/.  
  • Lai, J., Wang, Y., Han, J., Foley, S.L., Li, R., Shen, J. and Wu, C. (2013). Unique class 1 integron and multiple resistance genes co-located on IncHI2 plasmid is associated with the emgering multidrug resistance of Salmonella Indiana isolated from chicken in China. Foodborne Pathogens and Disease, 10 (7):581-588.  
  • Li, Y.,  and Chen, T. Genotoxicity of silver nanoparticles. Nanomedicine, Nanotoxicology and Stem Cell Use in Toxicology.  
  • Li, Y., Bhalli, J.A., Yan, J., Pearce, M.G., Sadiq, R., Cunningham, C., Howard, P., Zhou, T. and Chen, T. (2013). Cytotoxicity amd gemotoxicity assessment of silver nanoparticles in mouse. Nanotoxicology: Informa Healthcare, PMID:24266:1-10.  
  • Lin, H., Mei, N. and Manjanatha, M. (2013). In vitro comet assay for testing genotoxicity of chemicals. Optimization in Drug Discovery: In Vitro Methods (Humana Press; Totowa, NJ), Chapter 31:517-536.  
  • Lu, Y., Sun, J., Petrova, K., Yang, X., Greenhaw, J., Salminen, W., Beger, R. and Schnackenberg, L. (2013). Metabolomics evaluation of the effects of green tea extract on acetaminophen-induced hepatotoxicity in mice. Food and Chemical Toxicology, 62:707-721.  
  • Lumen, A., Mattie, D. and Fisher, J.W. (2013). Evaluation of perturbations in serum thyroid hormones during pregnancy due to dietary iodide intake and per chlorate exposure using a biologically based dose response model. Toxicological Sciences, 133(2):320-341.  
  • Manjanatha, M., Cao, X., Shelton, S.D., Mittelstaedt, R.A. and Heflich, R.H. (2013). In vivo cII, gtp, and Spi` gene mutation assays in transgenic rodents. Methods Mol Biol, 1044:97-119.  
  • Mei, N., Guo, X. and Moore, M. (2013). Methods for using the mouse lymphoma assay to screen for chemical mutagenicity and photo-mutagenicity. Optimization in Drug Discovery: In Vitro Methods, Chapter 34:561-592.  
  • Meng, F., Luan, Y., Yan, J. and Chen, T. (2013). Regulatory role of microRNA in mutagenesis. John Wiley & Sons, Ltrd., 6:101-112.  
  • Mezal, E., Ali, N., Stefanova, R. and Khan, A.A. (2013). Isolation and molecular characterization of Salmonella enterica serovar Enteritidis from poultry house and clinical samples during 2010. Food Microbiology, 38:67-74.  
  • Mezal, E., Stefanova, R. and Khan, A.A.. (2013). Isolation and molecular characterization of Salmonella enterica serovar Javiana from food, environmental and clinical samples. International Journal of Food Microbiology, 164:113-118.  
  • Moore, M., Myers, M.B. and Heflich, R.H. (2013). Genetic Toxicology, Principles of Toxicology.  
  • O'Brian, T.J., Ding, H., Suh, M., Thompson, C.M., Harris, M.A., Haws, L.C., Winkelman, W.A., Wolf, J.C., Hixon, G.J., Schwartz, A.M., Parsons, B.L., Myers, M.B. and Proctor, D.M. (2013) Assessment of K-Ras mutant frequency and micronucleus incidence in the mouse duodenum following 90-days of exposure to Cr(VI) in drinking water. Mutation Research, 754:15-21.  
  • Park, M., Sutherland, J.B., Kim, J.N. and Rafii, F. (2013). Effect of fluoroquinolone resistance selection on the fitness of three strains of Clostridium perfringens. Microbial Drug Resistance, 19(6):421-7.  
  • Park, S., Park, M. and Rafii, F. (2013). Comparative transcription analysis and toxin production of two fluoroquinolone-resistant mutants of Clostridium perfringens. BMC Microbiology, 13:50.  
  • Parsons, B.L., Manjanatha, M., Myers, M.B., McKim, K.L., Wang, Y., Gollapudi, B., Haber, L., Moore, M. and Moore, M. (2013). Temporal changes in K-ras mutant fraction in lung tissue of big blue B6C3F1 mice exposed to ethylene oxide. Toxicological Sciences, 136(1):26-38.  
  • Parsons, B.L., Myers, M.B. (2013). KRAS mutant tumor subpopulations can subvert durable responses to personalized cancer treatments. Personalized Medicine, 10(2):191-199.  
  • Parsons, B.L., Myers, M.B. (2013). Personalized Cancer Treatment and the Myth of the KRAS wild-type Colon Tumor. Genetic and Molecular Toxicology, 15:259-267.  
  • Patterson, T.A., Twaddle, N.C., Roegge, C.S., Callicott, R.J., Fisher, J.W. and Doerge, D.R. (2013) Concurrent determination of bisphenol A pharmacokinetics in maternal and fetal rhesus monkeys. Toxicology Letters, 267(1):41-48.  
  • Pfuhler, S., Elespuru, R.K., Aardema, M., Doak, S.H., Donner, M., Honma, M., Folders, M.K., Kim, J.H., Landsiedel, R., Manjanatha, M. and Singer, T. (2013) Genotoxicity of Nanomaterials: Refining Strategies and Test for Hazard Indentification. Summary of a workshop of the Environmental Mutagen Society(EMS). Environmental and Molecular Mutagenesis, 54:229-239.  
  • Pogribny, I.P. (2013). Modulation of intracellular iron metabolism by iron chelation affects chromatin remodeling proteins and corresponding epigenetic modifications in breast cancer cells and increases their sensitivity to chemotherapeutic agents. International Journal of Oncology, 42:1822-1832.  
  • Rafii, F. (2013). Serratia. Encyclopedia of Food Microbiology, 54:301-310.  
  • Rafii, F., and Khare, S. Microflora of the intestine: detection and enumeration of probiotic cultures. Encyclopaedia of Food Microbiology.  
  • Ruiz, P., Yang, X., Lumen, A. and Fisher, J.W. (2013). Quantitative structure activity relationship (QSAR) models, physiologically based pharmacokinetic (PBPK) models, biologically based dose response (BBDR) and toxicity pathways: computational tools for public health. Computational Toxicology: Methods and Applications for Risk Assessment, 1:Chapter 2.  
  • Schisler, M.R., Moore, M. and Gollapudi, B. (2013). In Vitro Mouse Lymphoma (L5178Y Tk+/- 3.7.2.C) forward Mutation Assay. Protocols in Genotoxicity Assessment, :27-50.  
  • Shaheen, B.W., Nayak, R.R. and Boothe, D.M. (2013). Emergence of New Delhi metallo-ß-lactamase (NDM-1) encoding gene in clinical Escherichia coli isolates recovered from companion animals in the United States. Antimicrobial Agents and Chemotherapy, 57(6):2902-2903.  
  • Shaheen, B.W., Nayak, R.R., Foley, S.L. and Boothe, D.M. (2013). Chromosomal and plasmid-mediated fluoroquinolone resistance mechanisms among broad-spectrum-cephalosporin-resistant Escherichia coli isolates recovered from companion animals in the USA. Journal of Anitmicrobial Chemotherapy, 68:1019-1024.  
  • Shen, J., Xu, L., Richard, A., Fang, H., Bray, J.D., Judson, R., Zhou, G., Aungst, J., Teng, C., Harris, S.C., Callahan, L.N., Ge, W., Dai, S.Y., Su, Z., Jacobs, A.C., Harrouk, W., Perkins, R.G., Tong, W. and Hong, H. (2013). EADB: A Database of Estrogenic Activity of Chemicals for Assessing Potential Endocrine Activity. Toxicological Sciences, 135(2):277-291.  
  • Shen, J., Zhang, W., Fang, H., Perkins, R.G., Tong, W. and Hong, H. (2013). Homology Modeling, Molecular Docking, Molecular Dynamics Simulations and Free Energy Calculations Elucidated-Fetoprotein Binding Modes. MCBios Meeting Proceedings (BMC Bioinformatics), 14(Suppl 1):S6.  
  • Shi, Q., Greenhaw, J. and Salminen, W.F. (2013). Inhibition of cytochrome P450s enhances (+)-usnic acic cytotoxicity in primary cultured rat hepatocytes. Journal of Applied Toxicology, :DOI 10.1002/.  
  • Shi, Q., Yang, X. and Mendrick, D.L. (2013). Hopes and Challenges in Using microRNAs as Translational Biomarkers for Drug Induced Liver Injury. Biomarkers in Medicine, 7(2):307-315.  
  • Singh, P., Foley, S.L., Nayak, R.R. and Kwon, Y.M. (2013). Massively parallel sequencing of enriched target amplicons for high-resolution genotyping of Salmonella serovars. Molecular and Cellular Probes, 27:80-85.  
  • Starlard-Davenport, A., Kutanzi, K.R., Tryndyak, V.P., Word, B.R. and Lyn-Cook, B.A. (2013). Restoration of the Methylation Status of Hypermethylated Gene Promoters by miRNA-29B in Human Breast Cancer: A Novel Epigenetic Therapeutic Approach. Carcingenesis,12:15.  
  • Sun, J., Ando, Y., Ahlbory-Dieker, D., Schnackenberg, L., Yang, X., Greenhaw, J., Pence, L.M., Qian, F., Salminen, W.F., Mendrick, D.L. and Beger, R. (2013). Systems Biology Investigation to Discover Metabolic Biomarkers of Acetaminophen-Induced Hepatic Injury Using Integrated Transcriptomics and Metabolomics. Journal of Molecular Biomarkers and Diagnosis, S1:002.  
  • Sun, J., Schnackenberg, L., Khare, S., Yang, X., Greenhaw, J., Mendrick, D.L., Salminen, W. and Beger, R. (2013). Evaluating Effects of Penicillin Treatment on the Metabolome of Rats. Journal of Chrom. B., 932:134-143.  
  • Sutherland, J.B., Cornelison, C. and Crow, Jr., S.A. (2013). Yarrowia lipolytica (Candida lipolytica). Encyclopedia of Food Microbiology, 2nd Edition.  
  • Tong, W. (2013). Drug repositioning: a new path to address unmet clinical needs, Drug Discovery Today (DDT) http://www.drugdiscoverytoday.com/view/31444/drug-repositioning-a-new-path-to-address-unmet-clinical-needs/.   
  • Trickler, W.J., Guo, X., Cuevas- Martinez, E.Y., Ali, S.F., Paule, M.G. and Kanungo, J. (2013). Ketamine attenuates cytochrome p450 aromatase gene expression and estradiol-17b levels in zebrafish early life stages. Journal of Applied Toxicology, 10.1002.  
  • Varma, V., Kaput, J.A. Data Mining and Network Analysis: Potential Importance in Nutrigenomics Research. Nutrigenomics and Nutrigenetics in Functional Foods and Personalized Nutrition.  
  • Wang, C., Wang, S., Xia, Q., He, W., Yin, J., Fu, P.P. and Li, J. (2013). Phototoxicity of zinc oxide nanoparticles in HaCaT keratinocytes-generation of oxidative DNA damage during UVA and visible light irradiation. J. Nanoscience and Nanotech, 13(6):3880-3888.  
  • Wang, Y., Borlak, J.T. and Tong, W. (2013) Chapter 6: Toxicogenomics: A drug development perspective. Genomic Biomarkers for Pharmaceutical Development: Advancing Personalized Health Care, 1st Edition, 1:Chapter 6.   
  • Wang, Y., Lin, Z.L., Liu, Z., Harris, S.C., Kelly, R., Chen, M., Borlak, J.T. and Tong, W. (2013). A Unifying Ontology to Integrate Histological and Clinical Observations for Drug-Induced Liver Injury. American Journal of Histopathology, 182(4):1180-1187.  
  • Weng, Z., Suda, M., Ohtani, K., Mei, N., Kawamoto, T., Nakajima, T. and Wang, R. (2013). Subchronic exposure to ETBE resulting in genetic damage in Aldh2 knockout mice. Toxicology, 311:107-114.  
  • Word, B.R., Lyn-Cook, Jr., L.E., Mwamba, B., Wang, H., Lyn-Cook, B.A. and Hammons, G.J. (2013). Cigarette Smoke Condensate (CSC) Induces Differential Expression and Promoter Methylation Profiles of Critical Genes Involved in Lung Cancer in NL-20 Lung Cells In Vitro: Short- term and Chronic Exposure. Int J Toxicol, 32(1)23-31.  
  • Xia, Q., Yin, J., Zhao, Y., Wang, Y., Chen, S., Yu, H. and Fu, P.P. (2013). UVA photoirradiation of nitro-polycyclic aromatic hydrocarbon - formation of reactive oxygen species and lipid peroxides., Environ. Photochem. Photobiol., 10(3):1062-1084.  
  • Xuan, J.,  and Guo, L. (2013). MicroRNA profiling: strategies and challenges. microRNAs in Toxicology and Medicine, :437-455.  
  • Xuan, J., Yu, Y., Qing, T., Guo, L. and Shi, L. (2013). Next-generation sequencing in the clinic: promises and challenges. Cancer Letter, S034-3835:672-676.  
  • Yang, L., Price, E.T., Chang, C., Li, Y., Huang, Y., Guo, L., Kaput, J.A., Shi, L. and Ning, B. (2013). Gene Expression Variability in Human Hepatic Drug Metabolizing Enzymes and Transporters. PLoS One, 8(4):e60368. doi.  
  • Yang, X., Doerge, D.R. and Fisher, J.W. (2013). Prediction and evaluation of route dependent dosimetry of BPA in rats at different life stages using a physiologically based pharmacokinetic model. Toxicology and Applied Pharmacology, 270:45-59.  
  • Yang, X., Greenhaw, J., Shi, Q., Roberts, D.W., Hinson, J.A., Muskhelishvili, L., Davis, K.J. and Salminen, W.F. (2013). Mouse Liver Protein Sulfhydryl Depletion after Acetaminophen Exposure. Journal of Pharmacology Experimental Therapeutics, 344:286-294.  
  • Yang, X., Mattes, W.B., Shi, Q., Weng, Z. and Salminen, W. (2013). Cell-free microRNAs as Biomarkers in Human Diseases. microRNA in Toxicology and Medicine, :do1:10.1002/. 
  • Yu, L., Veenstra, T.D. (2013). Phosphopeptide Enrichment Using Offline Titanium Dioxide Columns for Phosphoproteomics. Proteomics for Biomarker Discovery: Methods in Molecular Biology, 1002:93-103.
  • Zhang, X., Newport, G.D., Paule, M.G., Liu, F., Liu, S., Berridge, M.S., Apana, S.M., Slikker, W. and Wang, C. (2013). Quantitative assessment of acetyl-carnitine effects on anesthetic-induced neuronal death by microPet/CT imaging. Journal of Drug and Alcohol Research, 2:1-8.  
  • Zhang, Y., Ferguson, S.A., Watanabe, F., Xu, Y., Jones, M.Y., Biris, A.S., Hussain, S.M., Howard, P. and Ali, S.F. (2013). Effects of silver nanoparticles on body weight and locomotor activity in male sprague-dawley rats. Small Nano Micro, 9 Issue 4.  
  • Zou, W., Chen, H., Hise, K.B., Tang, H., Foley, S.L., Meehan, J.F., Lin, W., Nayak, R.R., Xu, J.Z., Fang, H. and Chen, J.J. (2013). Meta-analysis of pulsed-field gel electrophoresis fingerprints based on the constructed salmonella database. PLoS ONE, 8(3):e59224. doi.  


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